Coregonus clupeaformis (lake whitefish): 121573718
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Entry
121573718 CDS
T08357
Symbol
zc3h12b
Name
(RefSeq) probable ribonuclease ZC3H12B
KO
K18668
ribonuclease ZC3H12 [EC:3.1.-.-]
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cclu03019
]
121573718 (zc3h12b)
Messenger RNA biogenesis [BR:
cclu03019
]
Eukaryotic type
mRNA degradation factors
Other degradation factors
RNases
121573718 (zc3h12b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Zc3h12a
UBA_6
KH_N4BP1_1st
Regnase_1_C
zf-CCCH_2
zf-CCCH_4
Motif
Other DBs
NCBI-GeneID:
121573718
NCBI-ProteinID:
XP_041741839
LinkDB
All DBs
Position
9:10228435..10237792
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AA seq
973 aa
AA seq
DB search
MVLELAVPANAGPLLHRSIQHIERIFRVRVSYGSAESNCDSTHVSTSNIIIVRVAEGEED
DCTKAKDYIVSLISPAHRKRERLTLALHKQLAALKSAIEYDSQAVVEVREHVVDISGGER
NVMTAWSTVEKIKMEKHPCREEAPELTEAQQPSGESEEGSSSESESEQQHQLQVNSGSCK
RKEPFSATKPHRQLCRSPCLDRPSFSQSSTLPELRPDDTKAAAVLKHASDKEYQTKMEFA
LKLGYSGEQVETVLNKLGAAALINDILAELVRLGNKGEPEVQASINTGTFISRGGPCVKE
AVSPEVSLEDDSVDPYDNLRPIVIDGSNVAMSHGNKEVFSCLGIQLAVDWFVEKGHKDIT
VFVPAWRKEQSRPDAPISDQDILRKLEKEKILVFTPSRRVQGRRVVCYDDRFIVKLACDS
DGIIVSNDNYRDLQNEKPEWKKFIEERLLMYSFVNDKFMPPDDPLGRHGPSLENFLRKRP
VVPEHKKQPCPYGKKCTYGHKCKYYHPERANQPQRSVADELRAFAKLSAVKTMSEGALAK
CGTGPTTAKGDSGSEAKRVAPKRQSDPSIRSAACEPEERLSAVRKPEANSVPSLVSALSV
PTMQPAKSHAAGALNTRSASSPVPGSLQFTHSSLEHMSSVQYPHPPILVTNSHGASVTYS
EQFPKYDSVSTDHGYYSMLSDFSNMSMSSMHNVDSFCSMEHEHGIYQRNPSQHCPEPCLS
HSNSDSFSSYGELYMSSVDSSLDESMKGQQSPAQNRLQAFSHGGFHHEALTRVQSYGPEE
PKQGPSGKQSISHLAPHVQHPVVGARSSCPGDYPLPQNVLPSQSSQPGRSLGMTRMDSIS
DSRLYESNPMRQRRPPLCREQHASWDPLPCGSESYGYHSYPLSNSLMQPCCERVMVRSMP
DKMEQIWRSPWENPPQAEHQERHVIPEHQYQTYRNLCNIFPAFVVHSVMEKNPHLMDPQQ
LAAVIVTKLRSCH
NT seq
2922 nt
NT seq
+upstream
nt +downstream
nt
atggttttggagctggcagtgcccgcaaatgcaggcccattgcttcaccgctccatccag
cacattgagcgtattttccgggtgagggtcagctacggatccgctgagtcaaactgcgac
agcacacatgtcagcaccagcaatataatcatagttcgtgtcgcagagggcgaggaagat
gactgcaccaaggcaaaagattacatagtgtccttaatttcaccagctcacagaaagaga
gagcgtctaacgttggctttacacaaacagctggctgcgctgaagtcagccatcgagtat
gattctcaggctgtggtggaggtgagggagcatgtggtggacatctcaggtggtgagagg
aacgtgatgacggcatggtcgacggtggagaagatcaaaatggagaaacacccatgcagg
gaagaggcccctgagctgactgaggcccagcagcccagtggggagtcagaggagggaagc
agctcagagagcgagtcagagcagcagcatcagctgcaggtgaacagcggcagctgtaag
aggaaagagcccttcagtgccaccaagcctcaccggcagctctgtcgctctccatgcctg
gaccggcccagcttctcccagagcagcactctaccagagctccgccctgacgacaccaag
gccgccgcagtgctcaaacatgccagcgacaaggagtaccaaaccaagatggagtttgcc
ttgaagctgggatactcaggtgaacaggtggagacagtgctgaacaagttaggggctgct
gcccttatcaatgacattctggctgagcttgtaaggcttggtaataaaggagaaccggaa
gttcaagccagcattaacaccggcacgttcatctcccgtggaggcccctgtgtcaaagag
gctgtcagtccggaggtgtcactggaagatgattccgtggatccttatgataatctcagg
cccatcgtcattgatggatcgaatgtggcgatgagccatggaaacaaagaggttttctct
tgccttggtatccaattggctgttgattggtttgtggagaaaggacacaaagacatcaca
gtgtttgttcctgcctggaggaaagagcagtcgaggcctgatgcccccatttcagaccaa
gacattttgcggaagctagagaaagaaaagatcctagtgttcaccccatctagaagagtc
cagggaaggagagtggtgtgctacgatgatcgcttcatagtgaagctggcctgtgactct
gatggcattattgtgtcaaatgacaactacagggacttacagaacgagaagccggagtgg
aagaagttcatagaggagcggctgctgatgtactcgtttgtcaatgataaattcatgcca
cctgatgatcctttaggaagacatggtccaagtttagagaatttcctccgcaagcgtcct
gttgttccagagcataaaaagcaaccctgtccatatgggaaaaaatgcacttatggacat
aagtgcaagtactatcacccagagcgtgcaaaccagccccagcggtcagtggctgatgaa
ctgagggcgtttgccaagttgtctgctgtgaagacaatgagtgagggggccctggccaag
tgtggcactggacccaccacagctaagggggacagtggctctgaggctaaacgtgtggcc
cctaagcgccagtctgatcccagcatccgctcagcggcctgcgagccagaggagagactg
tctgctgtccgtaagcctgaggcaaattctgtgccttccctcgtgtctgccctcagcgtg
cccaccatgcagcctgccaagagccacgcggctggtgccttgaacacgcgatcagccagc
agcccagtgcccggctccctccagttcacccacagctccctggagcacatgtctagtgta
cagtacccacacccacccatcctagtcaccaacagccatggtgcttctgtcacttacagt
gaacagtttcctaagtacgattctgtgagcacagaccacggatactactctatgcttagt
gatttttctaacatgagcatgagcagcatgcacaatgtggacagcttctgtagcatggag
catgagcacgggatttatcagagaaatcccagccagcattgccctgagccctgcctcagc
cactctaacagtgactccttctcctcttatggggaattatacatgagctcagtggacagt
agcctggatgagagcatgaaggggcagcagtctcctgcacagaacagactccaggccttc
tcccatggggggttccaccacgaagcactgacccgggtgcagagctatggccctgaggag
cctaagcagggtccaagtgggaagcagtccatatcccacctggcaccgcatgtccagcac
cctgttgttggggccaggtccagctgcccaggggactaccccttacctcagaatgtcctc
ccgtcacagtcctcgcagccgggacgctccctgggcatgacacgcatggacagcatctca
gactccaggctgtacgagagtaaccctatgaggcagcggagacccccactgtgccgcgaa
cagcacgccagctgggacccgctgccctgcggcagtgaatcctatggataccactcgtac
cccctgagtaacagcctgatgcagccatgttgtgagcgggtgatggtccgcagcatgcct
gacaagatggagcagatctggaggtctccgtgggagaacccgcctcaagctgagcaccag
gagcgccatgtcatcccagagcaccagtaccaaacataccgcaacctctgcaacatcttc
cccgctttcgtggtgcactctgtcatggagaaaaaccctcatctaatggacccacaacaa
ctcgctgccgtcattgtcacgaagctgaggtcttgccattaa
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