Coregonus clupeaformis (lake whitefish): 121573754
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Entry
121573754 CDS
T08357
Name
(RefSeq) THO complex subunit 5 homolog isoform X1
KO
K13174
THO complex subunit 5
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03013
Nucleocytoplasmic transport
cclu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121573754
09122 Translation
03013 Nucleocytoplasmic transport
121573754
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cclu03019
]
121573754
03041 Spliceosome [BR:
cclu03041
]
121573754
Messenger RNA biogenesis [BR:
cclu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
121573754
Spliceosome [BR:
cclu03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
121573754
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
FmiP_Thoc5
Motif
Other DBs
NCBI-GeneID:
121573754
NCBI-ProteinID:
XP_041741917
LinkDB
All DBs
Position
18
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AA seq
704 aa
AA seq
DB search
MSDALKKRKSKVLRSEMGTPEGKRGRGEGDQVSTAEEMRGVDSINSGGEGVKDLPVYSEE
VELDSRDPEEDYQEYKLTCEALAQLMNDIQEQKANGAKDGCTEIEEKRMQSCIHFMSLKK
LNRLAHMRLKRGRDQTHEGKQRVDVLHLQLQNLLYEVMHLQKEISKCLEFKSKHEEIDLV
SVDEFYQEAPPETSRSPLTKDDTHQLTLARLDWELEQRKRLAEQYKESLSSKEKIQKGIE
VKKEHLSSLQPGLNAIMQASLPVQEYLSMPFEQTQRQTEIARHLPPSLYVLLVQASAYGQ
ACDKSLSVSISGDVDEAKALSKPPEDSQDDDSGDSDAEEEQEKTKRRRPTTGGQLDDKRR
EMLKRHPLSLCLDLKCKDGSVLHLFFYYLMNLNIMTVKAKVSTATDLTGAISAGELLNSD
TLLNCLYANDQGRETPNPANRYQFDKVGISSFGDYVAELGHPYLWVQRLGGLQFPSDAPE
GVHAGSSLSASHMESTMKLLRGRVQSRLALHKQFSSLEHSIVPVSSECQHLFPAKVLSRL
ARWTTITHQEYTNLVFTQHVSEAGLARETDLFFMAVVERGTARLQAAVVLNPRYPVISPL
FAVSLSWKGERSGRTDDNLRAMESEVNVFKSELQGPRPGHQLLTNQVARLGVCLDVYLET
DGQDDSVEGPREFPREKMCLRTVRGPNRLKPFKYNHPQGFFSHR
NT seq
2115 nt
NT seq
+upstream
nt +downstream
nt
atgtcagacgccctgaagaagcgcaagtcgaaggtgctgcgcagcgagatgggcacacct
gaggggaaacgcggccgcggagaaggggaccaggtgagcactgcagaggagatgagaggg
gtggacagcataaacagtgggggtgagggggtcaaggacttacctgtgtacagtgaagag
gtggagctggatagcagggacccagaggaggactaccaggaatataaactaacctgtgaa
gctctggcccaactgatgaacgacatccaggagcagaaagccaacggcgccaaggatggg
tgtactgagatagaggagaagaggatgcagagctgtatccactttatgagtctgaagaaa
ctcaaccgcctggctcacatgagactgaagagggggagagaccagacacacgagggcaag
cagagagtggatgtgttgcacctgcagctccagaacctgctctatgaggtcatgcacctg
cagaaggagatcagcaagtgtctggagttcaagtcaaagcatgaagagatagatcttgtg
agtgtagatgagttctaccaggaggccccccctgagacatcccgcagccccctcaccaag
gacgacacccaccaactcacactggccaggctggactgggaactggagcagagaaagagg
ctggctgagcagtacaaggagtctctgtccagtaaggagaagatccagaaaggcattgag
gttaagaaggaacacctgagttctctacagcctggactcaacgctatcatgcaggcatcc
ctcccggtccaggagtacctctccatgccgtttgaacagacccagagacagacagagatc
gcccgccacctccccccctctctctatgtcctactggtacaggccagcgcttacggacag
gcctgcgataagagcctgagtgtgtccatcagtggagatgtggacgaggccaaagctctg
tctaaacctccagaggactcccaggatgatgattctggtgattctgatgcagaggaggag
caggagaaaactaagaggaggagacctactacaggtggtcagctggatgataagagacgt
gagatgctgaagagacaccctctctccctctgcctagacctcaaatgcaaagacggcagt
gtgctgcatctgttcttctactacctgatgaacctgaacatcatgactgtcaaggccaaa
gtctccaccgccacagacctcactggagctatcagtgctggggagctgttaaattctgac
acgctgctcaactgcctgtatgctaacgatcaggggcgcgagacgcccaaccctgctaac
cgctaccagtttgataaagtggggatcagttcatttggagactacgtggcagagctgggt
catccctacctgtgggtgcagagactgggaggactgcagttcccaagtgacgccccagag
ggtgtgcatgcaggcagttctctgagtgccagtcacatggagagcaccatgaagctgctg
agaggacgcgtccagtcacgcctggccctgcacaaacagttctcctcactagagcacagt
attgttccagtgtccagtgagtgccagcacctgttccctgctaaggttctctcccgcctg
gctcgctggactaccatcacacaccaggagtacacaaatctggtgttcacgcagcatgtg
tcagaagcaggtcttgctcgggagactgacctgttcttcatggccgtggtggagagagga
acagctcgtcttcaggctgcggtggtgttgaacccccgttacccagtcatttctcctctc
tttgctgtctcactcagctggaagggggagcgcagtggacgtactgacgacaaccttcga
gccatggagagtgaggtgaacgttttcaaatcggagctccaggggccccgcccaggccac
cagctgctgaccaatcaggtggctcgtctgggtgtctgtctggacgtgtacctggagaca
gacggacaggacgacagtgtggagggaccacgggagttccccagagagaagatgtgtcta
cgcactgtcaggggtccgaaccgtctgaagccgttcaagtacaaccacccccagggcttc
ttcagtcaccgctga
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integrated database retrieval system
