Coregonus clupeaformis (lake whitefish): 121573839
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Entry
121573839 CDS
T08357
Name
(RefSeq) PDZ and LIM domain protein 5 isoform X1
KO
K19867
PDZ and LIM domain protein 5/6/7
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
121573839
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
cclu04990
]
121573839
Domain-containing proteins not elsewhere classified [BR:
cclu04990
]
LIM domain-containing proteins
PDZ-LIM family proteins
121573839
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GFIT
Motif
Pfam:
LIM
PDZ
DUF4749
PDZ_6
LIM_FHL2-3_N
Zn_ribbon_IS1595
PDZ_2
Motif
Other DBs
NCBI-GeneID:
121573839
NCBI-ProteinID:
XP_041742103
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Position
9:complement(42823022..42953456)
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AA seq
623 aa
AA seq
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MNSNYSVSLGGPAPWGFRLQGGKDFCLPLTISRLTDGGKAAKAKISVGDVVLSIDGIATK
GMNHLEAQNKIKACTVNLNLTLQKASSVPKADAPKDKPLEIIKPVPITHPAPPSTFTSPS
PQPGAAYNKTARPFGGGSNVGAVTSSLTAPKVASIPSASSAFTPAAPSSQQPQPPFPLAS
RSRSPAPPSSAPPPRPGSGRSPFTTPSSTPSSSSSSSPARVTASSSNPGAPQSSCYNTPI
NLYSNANACEVAIGQRRGLLEAQGVVVDQIKEQFNGNRVEPELIHASPLSEASKKRLIED
TEDWHPRTGTSQSRSFRILAQITGTEKAQAQENSTGKNKVVEDAPPTGHVTTSVKTMTKV
PGAPKNGNSVPPPTFKTPSAQVKPSWPAGGPAGFSKGGAAPSFERVSNTAPVPKVSDRPA
PQAHPKDQDSLVQRAEHIAAGIRTPMCGHCDKVIRGPFLVAMGMSWHPEEFNCSHCHTSL
VEYGFVEERGTVYCAHCYEKFFAPTCTSCQQKVLGEVINALKQTWHVYCFLCASCQQPIR
NNTFHLEDGMPYCERDYYQLFGTSCHGCDFPIEAGDKFLEALGFTWHDTCFVCAVCNTSL
EGQAFFSKKDKALCKKHANTVKI
NT seq
1872 nt
NT seq
+upstream
nt +downstream
nt
atgaacagcaactacagtgtttccctgggtggccccgccccctggggcttcagactgcag
ggaggaaaggacttctgtctgcccctcactatctcacggctgaccgatgggggcaaggca
gccaaagccaaaattagtgtgggagatgtagttctgtctatcgacggaatcgccaccaaa
ggcatgaaccacctggaggcccagaacaagatcaaagcctgcacagtcaacctcaacctc
accctgcagaaagcttccagtgttcccaaggctgatgcaccaaaggacaagccactggag
atcattaagcctgtgccaatcacccatccagccccaccctccaccttcaccagcccctcc
ccccaacccggcgctgcctacaacaagacggcccgcccctttggcgggggcagcaatgtg
ggtgcagtcacttcctccctaaccgccccaaaggtggcctccatcccctctgcatcgtct
gctttcacccccgctgccccctcctcccagcagccccagcctcccttcccattagctagc
cgctcccgctccccagccccacccagctcagccccacccccaagacccggctctggccgt
tcccccttcaccaccccctcctccactccctcctcttcttcctcctcctccccggccaga
gtgacagcctcctcctccaatcccggtgctccgcagtcctcttgctataacacacccatc
aacctgtactccaatgccaatgcctgtgaggtggccataggacagaggcggggcctgttg
gaagcccagggtgtggtggtcgaccagatcaaagagcagtttaatgggaacagagttgaa
ccagagttgatccacgcctcgcccctcagtgaggccagtaagaagcgtctgatcgaggac
acagaggactggcatcctcgcaccgggacctcccagtccaggtccttcagaatcctggct
cagatcaccggcacagagaaagctcaagcccaggagaacagcactggaaagaataaagtt
gttgaggatgccccgcccactggccacgtcacaacgtcagtgaagaccatgaccaaagtc
ccaggagcccccaagaatggcaacagtgtccccccacccaccttcaagaccccctctgcc
caggtcaaaccctcctggccagctggaggtccagcaggtttctctaagggtggagctgcg
ccctcttttgagcgggtcagcaacactgcaccagtacccaaagtttctgaccgccccgcc
ccccaggcgcaccccaaggaccaggactccctggtacagcgggccgaacacatcgcagcg
ggaatacgcacccccatgtgtggccactgtgacaaggtcatcagaggacctttcctggtg
gccatgggcatgtcgtggcaccctgaggagtttaactgttcccactgccacacgtctctg
gtggagtatggcttcgtggaggagaggggaacagtgtactgtgctcactgctatgagaag
ttcttcgcccctacctgcaccagctgccagcagaaggtcctgggggaagtcatcaatgcc
ctgaagcagacatggcatgtgtactgcttcctgtgtgcgtcctgccagcagccaatcaga
aacaacaccttccacctggaggacgggatgccatactgcgaaagagactactaccaactc
tttggtaccagttgccatggttgcgactttcccattgaggcaggtgacaagtttctggag
gcgttgggattcacctggcatgatacctgcttcgtgtgtgcagtctgcaacaccagtttg
gagggccaagccttcttctctaaaaaggacaaggctctgtgcaagaaacacgccaacaca
gtcaagatctga
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