Coregonus clupeaformis (lake whitefish): 121573867
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Entry
121573867 CDS
T08357
Symbol
ddx55
Name
(RefSeq) ATP-dependent RNA helicase DDX55
KO
K14809
ATP-dependent RNA helicase DDX55/SPB4 [EC:
5.6.2.7
]
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
cclu03009
]
121573867 (ddx55)
Enzymes [BR:
cclu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
121573867 (ddx55)
Ribosome biogenesis [BR:
cclu03009
]
Eukaryotic type
Pre-60S particles
Helicases
121573867 (ddx55)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CTE_SPB4
ResIII
CTT_SPB4
Helicase_C_2
SBF_like
RestrictionSfiI
YbjM
HMUDK_HMUD1
Motif
Other DBs
NCBI-GeneID:
121573867
NCBI-ProteinID:
XP_041742161
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Position
9:complement(26553277..26557843)
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AA seq
607 aa
AA seq
DB search
MENTTEGKWDSLPVKLNDGIMQTLDELGFTHMTPVQSACIPLFMRNKDVAAEAVTGSGKT
LAFVIPIIEILIKREDKLKKMQVGALIVTPTRELALQISEVMGQFLQKFPQFRQILLIGG
SNPIEDVEKFKEQGANILIATPGRLEDMFRRKADGLDLALSVKFLEVLVLDEADRLLDMG
FEASLNVILGYLPKQRRTGLFSATQTQELEKLVRAGLRNPVRITVKEKGVAASCTQKTPA
RLCNYYTICRAEDKFNSLVAFLRQHKHEKQLVFFSTCACVEYFGRALEALIKNVTIHCIH
GKMKHKRNKIFSEFRSLKGGILVCTDVMARGIDIPEVHWVLQYDPPSCASAFVHRCGRTA
RIGNQGNAMVFLLPMEESYVTFLSINQKCPLEQMVPVSDVVDVLPKVKALALADRAMFDR
GMRAFVSTVQAYAKHECSLIFRVKDLDFVALARGFALLRMPRMPELKGKNFPDFIETTID
TDNIRYKDKQREKLRQKLLIELKVKREERAAAPKRHNDKNKAWSKQKNRKDRRRKTAAKR
NRDEGSDMDDEDMKELLKDTRLLKRLKKGQISEEDFEKQLTAGPKSQRKTATGPSEDPPS
SAGEEDV
NT seq
1824 nt
NT seq
+upstream
nt +downstream
nt
atggaaaacacaactgaaggaaaatgggatagtttacccgttaaacttaacgacggtatt
atgcaaacgctcgatgagcttggatttacacatatgacaccagttcagtctgcctgtatt
ccactgtttatgcgaaataaagatgtggctgccgaggctgtgactggcagtggaaagaca
ctggccttcgtgattcccatcatagagatacttataaagcgagaggacaaactgaagaaa
atgcaggttggtgcgctgattgtcacgccaacaagagagctggccctgcagatcagtgag
gtgatgggccagttcctccagaagttccctcagttcagacagattctgttgatcggaggg
agcaaccccattgaggatgtggagaagttcaaggaacagggggccaacatattgatcgcc
accccgggccgtctggaggacatgttcaggaggaaggcagacggtctggacctggccttg
tcagtcaagtttctggaggtcctggtcctggatgaggctgaccgcctgctggatatgggc
tttgaggccagtctgaatgttatcctggggtacctccctaagcagcgtcgtacaggtctg
ttttcagccactcagactcaggagctggagaagctggtgagagctggtctcaggaaccct
gtacgcatcacagtgaaggagaagggcgtggccgccagctgcacccagaaaacaccagcc
aggctctgcaactactacacaatctgcagagcggaggacaagtttaacagtctggtagcg
tttcttagacaacacaaacatgagaaacagctggtgttcttcagtacgtgtgcgtgtgtg
gagtactttggccgagccttggaggccctgattaagaacgtcaccatccactgcatccac
ggcaagatgaaacacaaacgcaacaagatcttctcagagtttaggagcctaaagggtggt
atcctggtgtgtactgacgtcatggccagaggcattgatatcccagaagtccactgggta
ttgcagtacgacccccctagttgtgccagtgcctttgtgcaccggtgtggacggacagca
cgcatcggtaaccaaggcaacgccatggtcttcctgctccccatggaggaatcttacgtc
accttcctgtccatcaaccagaagtgtcctctggagcagatggtcccagtgagtgacgtg
gtggatgttctgcccaaggtgaaggccctggctctggcagaccgggccatgttcgacagg
ggcatgagggcattcgtctccaccgtacaggcctacgccaaacacgagtgcagcctcatc
ttcagggtcaaagatctggactttgttgcgctggcccgtggcttcgccctcctccgcatg
cccaggatgcccgagctgaaagggaagaacttcccagacttcatagaaacgaccatagac
acagacaacatccgctacaaggacaagcagcgggagaagctgaggcagaagctgctgatt
gagttgaaggtgaagagagaggagagggccgctgcccccaagagacacaacgataagaac
aaagcctggtccaaacagaagaacaggaaggaccgcaggaggaagactgctgccaagagg
aaccgggatgagggctcggatatggacgatgaggacatgaaggagctgttgaaagacact
cgtctcctgaagagattgaagaagggacagatcagcgaggaggactttgagaaacagttg
acagcaggaccaaagagccagaggaagacagcaacaggcccctcagaggacccacccagc
tcagcgggagaggaggacgtatga
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