Coregonus clupeaformis (lake whitefish): 121573893
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Entry
121573893 CDS
T08357
Name
(RefSeq) very low-density lipoprotein receptor isoform X1
KO
K20053
very low-density lipoprotein receptor
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cclu04131
]
121573893
Membrane trafficking [BR:
cclu04131
]
Endocytosis
Clathrin-mediated endocytosis
Low-density lipoprotein receptor (LDLR) family proteins
121573893
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Ortholog
Paralog
GFIT
Motif
Pfam:
Ldl_recept_a
Ldl_recept_b
FXa_inhibition
EGF_CA
cEGF
SGL
Motif
Other DBs
NCBI-GeneID:
121573893
NCBI-ProteinID:
XP_041742208
LinkDB
All DBs
Position
9:27409800..27459172
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AA seq
890 aa
AA seq
DB search
MFTSILELLILRICLQQCGFVHGSKTECEPSQFQCGNGRCIPSVWQCDGDEDCSDGSDEN
TCVRKTCAEVDFVCRNGQCVPKRWHCDGEPDCEDGSDERMEVCHTRTCRVNEFSCGAGST
QCIPVFWKCDGEKDCDNGEDEMNCGNITCSSLEFTCASGRCISRNFVCNGEDDCGDGSDE
QECAPSSCGPSEFQCGNATCIPGNWVCDDDVDCQDQSDESPQRCGRQPTPPAKCSSSETQ
CGSGECIHRKWRCDGDPDCKDGSDEANCSVRTCRPDQFKCEDGNCIHGSRQCNGLHDCAD
GTDEVNCKNLTQCNGPDKFKCRSGECIEMSKVCNKARDCPDWSDEPIKDCNLNECLLNNG
GCSHICRDMVIGYECDCTPGLQLIDRKTCGDINECMNPGICSQICINLKGGYKCECHNSY
QMDPTTGVCKAVGKEPCLIFTNRRDIRKLGLERREYTQIVEQLRNTVALDADFTQQRIFW
ADLSQRAIFSTVLDKRGDVGSHVKVIDNVTPVGIAVDWIYNNIYWSDLGTKTIEVANFNG
TKRKVLFSSGLKEPASIAVDPLSGFLYWSDWGEPAKIEKSGMNGVDRQVLVQTDIQWPNG
ITLDLIKSRLYWVDSKLHMLCSVDLNGDNRRKVLQSPDYLAHPFALTVFEDRVFWTDGEN
EAIYGANKFTGADVITLASNLNEPQDIIVYHELIQLSGTNWCNEKGLNGGCAYMCLPAPQ
INKYSPKYTCVCPQDQTLASDGLHCRPVTPSAPSKDDGKALIHPTHPQATTVPKVVPKPV
PAEANSSTSIHEVNWTARGSAAAWAILPVLLLAMAAAGGYLMWRNWQLKNKKSMNFDNPV
YLKTTEEDLNIDISRHTSNIGHTYPAVRSLLERLGVITSISVVNTEDDLS
NT seq
2673 nt
NT seq
+upstream
nt +downstream
nt
atgttcacttctattctggagcttcttatcctacggatatgtcttcagcagtgcggtttt
gtacacggatcaaagacagaatgtgagcccagtcagttccagtgtgggaacggccgctgc
atcccgtctgtctggcagtgtgacggggatgaggactgctcagacgggagtgatgagaac
acctgcgttcgcaaaacctgtgcagaagtggactttgtctgtcgaaacggccaatgcgtc
cccaagagatggcactgcgacggagagccagactgtgaggatggatctgacgagcgcatg
gaagtgtgccacaccaggacctgccgtgtgaatgagtttagctgtggggccgggtccacc
caatgcatccccgtcttctggaagtgtgacggagagaaggactgcgataacggagaggat
gaaatgaactgtggtaacatcacatgctcctcgctggagttcacctgtgcgagcggccgc
tgcatctcccgtaacttcgtctgtaacggagaggacgactgtggtgacgggagtgatgag
caggagtgtgccccgtcctcctgtggccccagtgagttccagtgtggcaatgccacctgt
atccctggcaactgggtctgtgacgatgatgtggactgccaggaccaatcggatgagtcc
cctcagcgatgtggtcgccaacccacgccgccggccaaatgttcgtccagcgagacacag
tgtgggtctggggagtgcatccaccgcaagtggcgatgtgacggagaccctgactgtaag
gatggcagcgacgaagccaactgttctgttcgtacctgcagaccggaccagttcaagtgt
gaggatggcaactgtatccacggcagcagacagtgcaacggtttgcatgattgtgcagat
ggcaccgatgaggtcaactgcaaaaacttgacacagtgcaatggccctgacaagttcaag
tgtcggagtggagagtgtatagagatgagtaaagtgtgcaacaaggcccgggactgtcca
gactggagcgacgagcccatcaaagactgcaacctgaatgagtgtctgctgaacaatgga
ggctgctcccacatctgcagggacatggtgattggctacgagtgtgactgcacccctgga
ctgcagctcatagaccgcaagacctgtggagacatcaatgaatgtatgaaccctgggatc
tgtagtcagatctgtatcaacctgaagggaggttataagtgcgagtgccacaacagctac
cagatggaccccaccacaggagtgtgcaaggctgtgggcaaggaaccctgtctaatcttc
actaaccgccgggacatccggaagctgggtctggagcggcgggagtacacccagatcgtg
gagcagctgcggaacacggtggcactggacgcagacttcacccagcagaggatcttctgg
gcagacctgagccagagggccatctttagcactgtattggataagcgaggagacgtagga
agtcatgtgaaggtgattgataatgtgacacctgtggggatcgctgtggactggatctat
aacaacatctactggtcagacctcggcaccaagaccattgaagtggccaacttcaacggc
accaagcggaaagttctcttcagcagcggtttgaaagagcctgcgtccatcgctgtggat
ccactctctggattcctctattggtcagactggggtgaaccagcgaagattgagaagtct
ggtatgaacggggttgacaggcaggtcctggtccagactgatattcagtggcccaatgga
atcactctagacctgatcaagagtagactgtactgggtggactccaagctgcacatgctc
tgtagtgtggacctgaatggagacaaccgtaggaaagtgctgcagtccccagactacctg
gctcaccccttcgctctcactgtgttcgaggatcgagtgttctggacagatggggagaac
gaggcgatctatggagcaaacaagttcacaggcgctgatgtgattaccctggcaagcaat
ctgaacgagccgcaggacatcattgtttaccatgagctaatccagctgtccggaacaaac
tggtgcaatgagaagggtctgaacggaggctgtgcctacatgtgcctgccagctccacag
atcaacaaatactccccgaagtacacgtgtgtgtgtccgcaagaccagacgctcgcctca
gacggccttcactgcagaccagtgacaccttcagctccctcaaaggatgatgggaaagct
ctaatacatcccactcacccccaagcgaccacagtgccaaaagttgtccccaaacctgtc
cctgctgaagccaacagcagtacatccatccatgaggtgaactggacagctagaggatct
gcagctgcctgggctatcctccctgtgttgttgcttgccatggctgcagcaggaggctac
ttgatgtggcgtaactggcagctgaagaataaaaagagcatgaacttcgacaatccagtg
tacctgaaaaccacagaagaagacctcaacattgatatcagcaggcacacctccaatata
ggccacacatacccagcagtaagaagcctacttgagcgattgggagtcatcacttctata
tcagtggtgaatacagaagatgacttgtcataa
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