Coregonus clupeaformis (lake whitefish): 121573965
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Entry
121573965 CDS
T08357
Name
(RefSeq) HMG box transcription factor BBX isoform X1
KO
K21643
HMG box transcription factor BBX
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cclu03000
]
121573965
Transcription factors [BR:
cclu03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
121573965
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
DUF2028
HMG_box
HMG_box_2
Motif
Other DBs
NCBI-GeneID:
121573965
NCBI-ProteinID:
XP_041742321
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Position
9:38794944..38835795
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AA seq
923 aa
AA seq
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MRLTTAQLEHHALITFTFWVACCRLGSAMKGGGRGKEPPVEVEVSGKRPKRKCLQWHPLL
SKKALDFSEEEEEEDEEELEKEPLLVRESRGPEVACGGPMEVDSSEQRARRPMNAFLLFC
KRHRSLVRQEHPRLDNRGATKILADWWAVLEPKEKQKYTDMAKEYKDAFMKANPGYKWCP
TTNKPVKSPCHTVSNASKKVWSFPSNSPKGCATAKKVPKTDSTPQLNFAMADPTKMGGLS
MLLLAGEHALTAREISSSSSKSGATDVTKHPGKSSLFQLAEISSSTLRPNLTDIAGEGKP
LSRGDQAETWSGTSQQGKSDVSKINVKSPLFQLAEQISSDSSQSTALEAKQCSQSALFQL
AEMCLASEAGKMETQDDTCAPHIKTETVVKEETGGSIPDFPLSSPPSSSASSSSTPTNAS
PPLLSGQVASVKKKKKKKDASAREPPKAVDKDKSPRPGSPKKTLKKRPSSESELESLLYT
IEAVAKGAWGDTEEEISKKKDSTAAVIIPGEPSSPKKKFRAKRPLKAKEEDEMEEDKEDG
RRTELPSTVEMAVNIASPKTEADEASIGSTPDPLGSTEEPTAPPSPPHIKHKVEEKQREV
EANAEGCGSRKSERSCKGALYKTLVSEGMLTSLRANVDRGKRGSFRSGSDEGSWTDETWA
FSQMGPTNPKKLKKSKSKDETAPGLGKLEEEFEKKFNSLPQYSPLTFDKKSTTVTKKKKT
DVSTTPEEQPPKPAKGPSPSQKKTLFHKIVSKYKQKKEKPNTVDKDIATRSDSPMSDSAA
KAKLSPAPCATATLSPEAMGTSASMPVGSQKRKARKSKITHLVRSADGRVSPAEEDKARD
LTPEQDEKPLPRETLCNETGCYNAPKQEEADRSSAPEVLPAFFSLSALAEVAAMENIHRG
QRVIGDSQKDMAQTPVLISCADQ
NT seq
2772 nt
NT seq
+upstream
nt +downstream
nt
atgaggttgacaacggctcagttggagcaccacgccttaattacctttacattctgggtg
gcctgttgcaggcttggcagcgccatgaaaggtggcggaaggggtaaggagcctccggtg
gaggtggaggtgagcggcaagcggcccaagcgcaagtgtctacaatggcacccgctactc
tccaagaaggccctggacttctcggaggaggaagaggaggaggacgaagaagaactggag
aaggagccattgctggtcagggagagccgggggccggaggtggcatgcggggggcccatg
gaggtggactcttcagagcagcgggcccgccggcccatgaacgccttcctgcttttctgc
aagcgccaccgctcgctggtgaggcaggagcaccctcggctggacaaccgcggtgccacg
aagatcctggctgactggtgggccgtgctggagcccaaagagaaacagaagtacacagac
atggccaaggagtacaaggatgccttcatgaaggctaacccgggctataagtggtgcccc
accaccaacaagccagtcaagagcccctgccacactgtcagcaacgcaagcaaaaaagtg
tggtccttcccttccaactcccctaagggctgtgccactgccaagaaagtgccgaagact
gacagcacaccacagcttaatttcgccatggcagatcccacgaagatgggtggcctaagc
atgctactgttggctggggagcatgcccttactgccagagagatttcctccagctcctca
aagtctggagccacggatgtcactaagcaccctgggaaatcctccttattccaacttgct
gagatctcctccagcacgcttcggcccaatttaacggacatagctggcgagggaaagccc
ttgagtcgcggggaccaggcagaaacgtggtctggcacctcacagcagggaaagtctgac
gtatccaagatcaacgtcaagtcccctctttttcaactggcagagcagatctcctctgat
tcaagccagtcgactgcactggaggcaaagcagtgtagccagtcggctctcttccagctc
gctgagatgtgcttggcctccgaggcagggaagatggagacacaggatgatacctgcgcc
ccacacatcaaaactgagacggtggtcaaggaggagactgggggcagcatccccgatttt
cctctctcctctcccccgtcttcctcagcttcttcctcctccacgcccaccaacgccagt
cccccgctgctcagcggccaagtggctagcgtcaaaaagaaaaagaagaagaaagacgct
agtgccagagagccacccaaagcggtggacaaagacaagagccctcgtcccggctcaccc
aaaaagaccctcaaaaagcgaccatcgtctgagtcggagttggagagcctcctctacact
atcgaggccgtggctaaaggggcctggggcgacaccgaggaggaaatatccaagaagaag
gatagcaccgccgccgttatcattccgggagagcccagctcacccaaaaagaagttcaga
gccaagaggcccctgaaggctaaggaagaagatgagatggaggaggacaaagaggatgga
aggcgcacagagctgccatcgacagtggagatggcagtgaatatagcaagccccaagaca
gaggctgatgaggccagcatcggcagcaccccggatcccctgggcagcacggaggagccc
accgcccctcccagccccccgcacatcaagcacaaagtcgaggagaagcagagggaagtg
gaggccaacgccgaagggtgtggctccaggaagtcggagagaagctgcaagggggcgctg
tacaaaaccctggtgtcggaagggatgctgacctcactgagggccaacgtggacagaggc
aaaagaggctcttttcgaagtggatctgatgaagggagctggactgacgagacctgggct
ttctcacagatgggacccactaatcccaagaagctaaagaagtcaaaatccaaagacgaa
actgcgccaggtttggggaaactggaggaggagtttgagaaaaagttcaacagcctgccg
cagtacagccctctgacgttcgacaagaaaagcaccaccgtcaccaagaagaaaaaaact
gacgttagcaccacaccggaggaacaacccccgaaacctgccaagggtccatctccatct
cagaaaaagactttattccacaagattgttagcaagtacaagcagaaaaaggagaagccc
aatactgtggacaaagacatagcgacgcgtagtgactcccccatgtcagactcagctgcc
aaggccaagctgagccccgccccatgtgccaccgccacgctttccccagaggccatggga
actagcgctagtatgccggtgggcagccagaagaggaaggctaggaagagcaaaatcacc
cacctggtgcgctcggccgacggcagggtgtccccagcagaggaggacaaagccagggac
ctgaccccagagcaggacgaaaagccattaccccgagagactttatgcaatgaaacaggg
tgctacaacgcacccaagcaagaggaagcggataggagcagtgcacccgaagtcctgccc
gccttctttagcctgtctgcccttgccgaggtggcagccatggagaacattcacagaggc
cagcgtgtgattggcgacagccagaaggacatggcccagacccctgtcctcatctcctgc
gctgaccaatga
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