Coregonus clupeaformis (lake whitefish): 121573973
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Entry
121573973 CDS
T08357
Name
(RefSeq) serine/arginine-rich splicing factor 7-like isoform X1
KO
K12896
serine/arginine-rich splicing factor 7
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03040
Spliceosome
cclu05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121573973
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
121573973
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cclu03041
]
121573973
Spliceosome [BR:
cclu03041
]
Common components
Common spliceosomal components
SR proteins
121573973
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Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
zf-CCHC
RRM_5
zf-CCHC_3
Motif
Other DBs
NCBI-GeneID:
121573973
NCBI-ProteinID:
XP_041742338
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All DBs
Position
9:38434020..38446997
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AA seq
271 aa
AA seq
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MSHSSRSSSRNTDCKVYVGDLGNGAAKGELERAFSYYGPLRSVWVARNPPGFAFVEYEDP
RDAEDATKGMDGKVLCGSRIRVELSTGMSRKSRYGRPSRRHFDPNDRCYQCGESGHYAYD
CSRFGKRGGGRRRSRSRSRSRSRSRGRRYRSRSRSNDRDRRNRSPSYSKRRSRSGSPARS
KSRSPVHRSRTPVRRSRTPVRRSRTPVRRSVSRSHSRSVSRPRARSVSRSRSRSRSATTK
RNRSCSTENANCLPALFQPIQVSQPEEKPHT
NT seq
816 nt
NT seq
+upstream
nt +downstream
nt
atgtcccactcatcacgaagctcctcgcgcaacactgactgcaaggtgtatgtgggtgac
ctaggcaacggtgctgccaagggggagttggagcgggcgttcagctactatggacctctg
cgcagcgtctgggtggccaggaacccgcctggctttgccttcgtcgagtacgaagatccc
agagatgctgaggatgcgacgaagggcatggacggcaaagtgctctgtggttcccgcata
agagtggagttgtcaacgggtatgtctcgcaagtcacgctacggccgccccagccgtcgg
cactttgaccccaacgaccgctgctaccaatgtggcgagagcggccattatgcatatgac
tgctctcgctttggcaagaggggaggaggccgccgccgcagcaggtcccgctcacgatct
cgctcaaggtccaggggaaggcgttaccgctcacgcagccgaagtaatgaccgtgaccgg
cgtaatagatccccatcatactcaaagcgcagaagcagatctgggtccccagcacgttct
aagtccagaagtccagtgcacagatccaggaccccagtccgtcgatccaggaccccagtc
cgtcggtcgaggactccagtgcgcagatcagtaagtcgctcccattcccggtcagtgtcc
cgccccagggcgcggagcgtctccagatctcgctccaggtcccgctcagccaccaccaag
aggaacaggtcgtgctccactgaaaatgcgaattgtcttcctgccttgtttcagccgatc
caggtctcccagccagaggaaaagccccatacctga
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