Coregonus clupeaformis (lake whitefish): 121574022
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Entry
121574022 CDS
T08357
Name
(RefSeq) gamma-aminobutyric acid receptor subunit alpha-6
KO
K05175
gamma-aminobutyric acid receptor subunit alpha
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04080
Neuroactive ligand-receptor interaction
cclu04082
Neuroactive ligand signaling
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
121574022
04082 Neuroactive ligand signaling
121574022
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
cclu04040
]
121574022
Ion channels [BR:
cclu04040
]
Ligand-gated channels
GABA-A
121574022
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Motif
Pfam:
Neur_chan_LBD
Neur_chan_memb
CytochromB561_N
Motif
Other DBs
NCBI-GeneID:
121574022
NCBI-ProteinID:
XP_041742469
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Position
9:complement(47906128..47942305)
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AA seq
451 aa
AA seq
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MAFVFTFFFLSCVINVWGNNPKSTETDGNIYLDNITRILDGLLDGYDNRLRPGFGGPVTE
VKTDIFVTSFGPVSDVEMEYTMDVFFRQTWIDQRLKFEGPIEILRLNNLMVSKIWTPDTF
FRNGKRSISHNMTTPNKLFRIMQNGTILYTMRLTINAECPMRLMNFPMDGHACPLKFGSY
AYPMSEIVYTWKKGPLFSVEVPEESSSLLQYDLIGQTVSSERLKSNTGEYVIMTVHFHLQ
RKMGFFLIQTYIPCIMTVILAQVSFWINKESVPARTVFGITTVLTMTTLSISARHSLPKV
SYATAMDWFIAVCFAFVFSALIEFAAVNYFSTLQANRELRKAAAIKAAQEAAEAGRSDGE
SSSDASSMLKKRMNSTPHFERPAEVFPNPPVNAQAFLQQGSAMPSNNLLTGTSIIDKYSR
ILFPLSFGAFNLVYWIVYLTKDTMEMTRDSV
NT seq
1356 nt
NT seq
+upstream
nt +downstream
nt
atggctttcgttttcactttcttttttctgtcctgtgtgatcaatgtttggggaaataat
ccgaaatcgacagagactgatgggaatatctatttggataacatcacgcgtatattggat
ggattactagatggatatgacaaccgactgcgacctggatttggaggtccagttactgag
gtcaaaacagacatctttgtaaccagctttggtccagtgtcagatgttgagatggagtac
accatggatgtatttttccgtcaaacgtggattgaccagaggttgaaattcgagggcccc
atcgagattctgcggctcaacaacctcatggtcagcaagatctggacaccagacacattc
ttccggaatggcaagaggtccatctctcacaacatgaccactcccaacaagctgttccgc
atcatgcagaacggaactatcctctacaccatgagattgactataaatgcagagtgtccc
atgcgactgatgaacttccccatggacggccatgcctgtcctctcaagtttggtagctat
gcctaccccatgagtgaaattgtgtacacatggaaaaaaggaccactgttttctgtggaa
gtaccagaggagtcctccagcttgctacagtacgatctaataggacagactgtgtccagt
gagaggttaaaatccaacacaggtgaatatgtaatcatgactgttcacttccacctgcaa
aggaagatgggcttcttcttgattcagacatacatcccctgtatcatgacggtgatcctg
gctcaggtctctttttggatcaataaggaatcggttcctgctcgaactgtatttggcatt
accactgtgctaaccatgaccacactcagcatcagcgcccgccactctttgcccaaggtt
tcctacgccacggccatggactggttcattgctgtatgtttcgccttcgttttctcagcc
ctcatcgagtttgccgcagtcaactacttctccacgctgcaggccaaccgggagctccgc
aaggcggccgccatcaaggcagcccaggaggctgcagaggccgggaggagcgacggggag
tcctcttcggatgccagcagtatgctgaagaagaggatgaactccacgcctcactttgag
aggccagcagaggtgttccctaaccctccagtgaatgcccaggccttcctccagcaaggc
tcagccatgccatccaacaacttactgacaggcaccagcatcatagacaagtactcacgc
atcctcttccctctgtcgttcggggccttcaacctggtctattggatagtctatcttacc
aaggacaccatggagatgacaagggacagcgtgtga
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