Coregonus clupeaformis (lake whitefish): 121574025
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Entry
121574025 CDS
T08357
Name
(RefSeq) gamma-aminobutyric acid receptor subunit gamma-2-like isoform X1
KO
K05186
gamma-aminobutyric acid receptor subunit gamma
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04080
Neuroactive ligand-receptor interaction
cclu04082
Neuroactive ligand signaling
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
121574025
04082 Neuroactive ligand signaling
121574025
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
cclu04040
]
121574025
Ion channels [BR:
cclu04040
]
Ligand-gated channels
GABA-A
121574025
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Motif
Pfam:
Neur_chan_memb
Neur_chan_LBD
PH_24
Motif
Other DBs
NCBI-GeneID:
121574025
NCBI-ProteinID:
XP_041742475
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Position
9:complement(47767120..47827316)
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AA seq
477 aa
AA seq
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MVKMAPPNVASKCSTAMEKASFPLKLFLWVFLFANFPTSSIQTENDDDEVTNKTWVLTPK
VYESDVTNILNSLLDGYDNKLRPDIGVKPTVIHTDMFVNSIGPVNAINMEYTIDIFFAQT
WYDRRLKFNSTMKVLRLNSNMVGKIWIPDTFFRNSKKADAHWITTPNRMLRIWNDGRILY
TLRLTIDAECQLKLNNFPMDEHSCPLEFSSYGYPREEIVYKWKRSSVEVGDIRSWRLYQF
SFVGLRNTSEIVRTVSGDYVVLTVFFDLSRRMGYFTIQTYIPCTLIVVLSWVSFWINKDA
VPARTSLGITTVLTMTTLSTIARKSLPKVSYVTAMDLFVSVCFIFVFAALIEYGTLHYFV
SNRKPSTKKDKKKKNPLLRFFSSKQTPTVDIRPRSATAIQMNNATHMQERDEEYGYECLD
GKDCTSFFCCFEDCRSGAWRHGRLHIRVAKIDSYARIGFPTAFGLFNLVYWISYLYL
NT seq
1434 nt
NT seq
+upstream
nt +downstream
nt
atggtgaaaatggctcctccaaatgtagcatctaaatgctcgacagcgatggagaaggct
tccttccctctaaagctatttctctgggtgtttttattcgctaattttcctacaagctcc
atccagactgaaaacgatgatgatgaagtgaccaacaaaacctgggtgttgactcccaaa
gtgtacgaaagcgatgtcaccaacatcctaaacagcctactagatggctacgataacaaa
cttcgaccagatataggagtcaaaccaaccgtgatccacacggacatgtttgtcaacagt
atcggcccagtaaatgctatcaatatggagtacaccatcgacatcttttttgcccagacg
tggtatgaccggagattgaagttcaacagtaccatgaaggtcctgcgtctcaacagcaac
atggtaggcaagatctggatacccgacaccttcttccgcaactccaagaaggctgacgcc
cactggatcaccacgcccaatcgcatgctccggatctggaacgatggacggatactctac
acactgcggttgactattgatgccgagtgccagcttaaactgaacaactttccaatggat
gagcactcctgtcccctggagttttcaagctatggttaccccagagaggagatagtgtac
aagtggaagaggagctccgtggaggtgggagacatccgctcctggaggctctaccaattc
tccttcgttggcctgaggaacacctccgagatcgtcaggaccgtgtcaggcgactacgtt
gtgctgacagtcttcttcgacttgagcaggcggatgggttacttcaccattcagacctac
atcccctgcaccctcatcgttgtcctctcctgggtctccttttggattaacaaggatgct
gtgcctgctagaacatccttaggcattaccactgtgctgaccatgactacgctgagtacc
atagccaggaagtcgttgcctaaggtatcctacgtgacggccatggacctctttgtgtcc
gtgtgcttcatctttgttttcgccgcgctgatagagtatggaacactgcactactttgtg
agcaacaggaagccaagcacaaaaaaggacaagaaaaagaaaaacccgctcctccggttc
ttttcctcaaagcagacccctacggtggacatacggcctcgctcagccaccgccatccag
atgaacaacgccacccacatgcaggagcgagatgaggagtatggctacgagtgcctggac
ggcaaggactgcaccagcttcttctgctgtttcgaggactgccgctccggggcctggcgg
catgggcggttgcacatccgtgtcgccaagatagactcgtacgctcgcatcggtttcccc
accgctttcggtctctttaacctggtttactggatctcctatctctatctctag
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