Coregonus clupeaformis (lake whitefish): 121574097
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Entry
121574097 CDS
T08357
Name
(RefSeq) E3 ubiquitin-protein ligase RNF43-like isoform X1
KO
K15694
E3 ubiquitin-protein ligase RNF43 [EC:
2.3.2.27
]
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04310
Wnt signaling pathway
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09130 Environmental Information Processing
09132 Signal transduction
04310 Wnt signaling pathway
121574097
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
cclu04121
]
121574097
Enzymes [BR:
cclu01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
121574097
Ubiquitin system [BR:
cclu04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
121574097
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ZNRF_3_ecto
zf-RING_2
zf-RING_11
zf-C3HC4_2
zf-C3HC4
zf-rbx1
zf-RING_5
zf-RING_UBOX
zf-C3HC4_3
zf-ANAPC11
zf_RING_Vps8_fungal
zf_RING_Vps8
PA
Motif
Other DBs
NCBI-GeneID:
121574097
NCBI-ProteinID:
XP_041742629
LinkDB
All DBs
Position
9:53882853..54051691
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AA seq
864 aa
AA seq
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MTVPQRRLAGLWPWLLIAALQVVFGQTGLELAAAVETERSAPRAVIKVTLLRHEPTGKPI
TLEGLFVEGSAGSAEGKLMQSHPLSLCNTSEDERQESDFISIVKLESPERKVSQCLSLLQ
KARLALERGAQAVIFDVTNDDTAAFELRESDSLPRPVVLVKAEDAEELMGLVNKNEEARV
RIDIKKEDPKWPHYDVGILLTIVLAILAIVLIFAFRYRCKSNRTWDSVHQQTMRAVSRLE
TRMYSSQGCGGSQRHHGGWGSNSSSNSSPVCAICLEEFRDGQDLRIISCAHEFHKECVDP
WLLQHRTCPLCMHNIMGTELSRQPQRSRLQQTPEHSQGFLHPHPYPHAFPQHPIPFSMRP
HYPRGRSGPYASLGHYSSSPPLDPQTLRFLPSWPLGSGCGYIHPAEGPGRPHKAGGSCRT
AGHPLGSHYGPGSRRSCHAYRSGCPTQRSASSSRLHHAPSFAPRASAGGAHSRGDEGGSC
SGGSYRTERSGYLADGPASDSSSGPCHGSSSDSVLNCTDVSLQGVYGSWSTFRSSLSSDY
DPFVYYGLGLGRTGRRDSMEAGVQRPRSLDSVVNRDRGGCPEEQPQAVFSHVHYHRHRHH
HYGEDGEREHAQGQGPGRGSDEEQGAAAAIGPGSGSPPALDKDSPVCPLKHSPCQCPKAE
HTDSRETHGHGTEDQDHELSLSPPSGPPPVLVPPAPLPPPAPCCLQDHSHGGHPHRRASR
LGGCVLDGPSVRFHQSLDLQDDCSIHIHYGQGYCCPPPDLPPTLLPMPVPLILDSGGMGA
LGGLEDWPCCGGPHHVVWQKRVQQAHSEPQLLGPRLGGPMDRPPPPCSRRHHGHHSPAHD
RNTDFCLYCQTLHNNQGSEEESGV
NT seq
2595 nt
NT seq
+upstream
nt +downstream
nt
atgaccgttccccagcggcgattggccgggctctggccgtggctgctcatagcggccttg
caggtggtgttcggccagacgggcctggagctggcggcggccgtagagacggagcgctct
gcccccagggctgtcatcaaggtgacactgctgagacacgagcccacggggaagcccatc
actctggaagggctgtttgtcgaagggagcgccggttctgcagaggggaagctcatgcag
tcccaccctctgtccctgtgcaacaccagtgaagatgagcggcaggagtctgacttcatc
agcatcgtcaagctggaaagcccggagcgcaaggtgtctcagtgtctgtccctgctccaa
aaggctcgcctggcgctggagagaggtgctcaggctgtcatcttcgatgtcaccaatgac
gacaccgctgctttcgagctgcgtgagtcagactccctgccgcgtccagtggtgctggtg
aaggctgaggatgctgaggagctgatggggctggttaacaagaacgaggaggctagagtc
cgcatcgatatcaagaaggaggacccaaaatggccccactatgatgttggtatcctgctc
actatagtcctggctattctggccatcgttttgatctttgccttccggtaccgatgcaag
tccaacagaacctgggactcagtccatcagcagaccatgcgagccgtcagtcgtctggag
acgcgaatgtacagctctcagggctgcgggggctcacagcgccaccatggaggctggggg
tctaatagcagctccaactctagccccgtctgtgccatctgtctggaggagttccgggat
ggacaggacctgaggatcatctcgtgtgctcatgagttccataaggagtgtgtggacccc
tggttgctgcagcaccgcacctgtcctctctgcatgcacaacatcatgggtacagagctg
tcacgtcagccccagaggagcagactgcagcagacccccgagcacagccagggtttcctg
cacccccacccctacccccacgccttcccccagcaccccatccccttctccatgaggcct
cactacccccgtggccgctccggcccctacgcctccctgggccactacagcagctcccca
cccctggacccccagaccctccgcttcctccctagctggcctctgggctccggctgtgga
tacatccaccctgcagagggccccgggaggcctcacaaggccgggggcagctgcaggacg
gcaggtcaccctctggggtcccactacggccccgggtcccgccgctcctgccacgcctac
cgctccggctgccccacccagcgcagcgcctccagttccaggctccaccacgccccctcc
tttgctccccgtgcctccgcagggggggcccacagccggggggacgagggaggcagctgc
tctggggggagctaccggacggagcgcagtggctacctggcagacgggccggccagtgac
tccagctctggcccctgtcacggttcatccagtgactcggtgctcaactgtaccgacgtg
tccctacagggtgtgtacggtagctggtccacattccgcagctccctgagcagtgactat
gatccgtttgtgtactacgggctgggtttgggccggacaggccgcagggacagcatggag
gcaggggtccagagaccaaggtccctggactcagtggtgaacagagacagaggagggtgc
cctgaggagcagccgcaggctgtgtttagccacgtccactaccaccgccacagacaccac
cactacggagaggacggggagcgggagcacgcccagggacagggaccaggcagggggtca
gatgaggagcagggggctgctgctgctattggccctggttctggttctcccccggctctg
gacaaggactccccagtgtgccctctgaagcacagcccctgtcagtgccctaaggcagaa
cacacagacagtagggagacccacggccacgggacagaggatcaggaccatgagcttagc
ctcagccccccttcaggcccccctcctgtcctggtacccccagcccccttaccaccccca
gccccctgctgcctccaggaccacagccatggaggccacccccaccggagggcaagccgg
ctgggcggctgcgtcctcgacggcccctctgtgcgcttccaccagagcctggacctgcag
gacgactgtagcatccacatccactacggccagggctactgctgccccccgcctgacctg
ccccccaccctgctgcccatgcctgtgcccctcattctggactctgggggcatgggggcc
ctagggggcctagaggactggccctgctgtggagggccccaccatgtggtgtggcagaag
cgggtgcagcaggcccactctgagccccagttgctggggcccaggctggggggccctatg
gacagacccccgcccccatgcagcaggcgtcaccacggtcaccacagcccagcgcacgac
cgcaacacagacttttgtttatactgccaaacattacacaacaatcagggatcagaggag
gagtccggtgtgtga
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