Coregonus clupeaformis (lake whitefish): 121574114
Help
Entry
121574114 CDS
T08357
Name
(RefSeq) transcription factor Sox-19a-like
KO
K16796
transcription factor SOX2 (SOX group B)
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cclu03000
]
121574114
Transcription factors [BR:
cclu03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
121574114
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HMG_box
HMG_box_2
HMG_WDHD1
SOXp
HTH_24
Motif
Other DBs
NCBI-GeneID:
121574114
NCBI-ProteinID:
XP_041742653
LinkDB
All DBs
Position
9:55549304..55551077
Genome browser
AA seq
311 aa
AA seq
DB search
MVNMYNIMEHQLKTSVPSHHLGTGMPPANGGGGHGGSHTGSKPPAIQPDPMDKVKRPMNA
FMVWSRGERRKMAQENPKMHNSEISKRLGVAWKSLTDAEKRPFIDEAKRLRAVHMKDYPD
YKYKPRRKTKLMPKNNTLAAQYQMSAGNHLLSASAAQGQGGNPRIDSYGWGHTGGYTATM
QSEALGYSQQLHRYDLSALQYQSSVAQAQAYMNGANAYSPMSYSSSPQQVSPVMSMVKQQ
SDGHSMSPSPTGTHNHHQAQRGIQVQGDHLRDMISMYMPGGDASDAQRGYSVSAANIQQH
YLGGSAPLTHL
NT seq
936 nt
NT seq
+upstream
nt +downstream
nt
atggtaaatatgtataacattatggagcaccaactcaagacctctgttccctcgcatcat
cttggaacagggatgccacctgcgaatggaggaggggggcacgggggcagccacacaggt
tccaaaccaccggcaatccaacctgacccaatggacaaagttaagcggcccatgaatgcc
ttcatggtatggtctcgcggtgaacgacggaaaatggctcaggagaatcccaaaatgcac
aattctgagatatccaaacggctgggtgtcgcgtggaaatctctgacagacgccgagaaa
aggcccttcattgacgaggccaagcgcctccgcgcggtgcacatgaaggattatccagac
tataaatacaaaccccgtcgtaaaaccaaactgatgccgaagaacaatactctagccgcg
cagtatcagatgtcggccggtaaccacctgctgagtgcatctgcagctcagggacaaggt
ggaaaccccagaatcgacagttatggctggggccacaccgggggctacaccgcgacgatg
cagagtgaggccctcggctacagccagcagcttcaccgctacgacctgtcagcacttcag
tatcagtccagcgtggcccaggcgcaggcctacatgaatggtgccaacgcatacagcccc
atgtcctacagcagcagcccccagcaggtcagcccagtgatgtctatggtgaagcagcag
tctgatggccacagcatgtccccctcccctacggggacccacaaccaccaccaggcccag
cgtggtatccaggtccagggggaccatctcagggacatgatcagcatgtacatgcccggg
ggagatgcctcagatgcccagagagggtactctgtctctgcagctaacatccagcagcat
tacctgggagggtcagctccactcacccacctttga
DBGET
integrated database retrieval system
