Coregonus clupeaformis (lake whitefish): 121574130
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Entry
121574130 CDS
T08357
Name
(RefSeq) lissencephaly-1 homolog B-like isoform X1
KO
K16794
platelet-activating factor acetylhydrolase IB subunit alpha
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu00565
Ether lipid metabolism
cclu01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09100 Metabolism
09103 Lipid metabolism
00565 Ether lipid metabolism
121574130
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
cclu03036
]
121574130
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
cclu04147
]
121574130
Chromosome and associated proteins [BR:
cclu03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
121574130
Exosome [BR:
cclu04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
121574130
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
EIF3I
Beta-prop_CAF1B_HIR1
Beta-prop_WDR75_1st
Beta-prop_TEP1_2nd
WDR55
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_C
Beta-prop_EML_2
Beta-prop_EIPR1
Beta-prop_WDR90_POC16_2nd
Beta-prop_IFT122_1st
ANAPC4_WD40
Beta-prop_SCAP
WD40_MABP1-WDR62_1st
Beta-prop_Nup120_160
Beta-prop_DCAF4
WDR90_beta-prop_4th
Beta-prop_EML
NBCH_WD40
Beta-prop_Vps41
WD40_RFWD3
LisH
Beta-prop_SPT8
LisH_PAC1
Beta-prop_DCAF12
Beta-prop_IFT140_1st
Beta-prop_RIG_2nd
Beta-prop_WDR35_TULP_N
Nucleoporin_N
Beta-prop_WDR19_1st
Pox_A_type_inc
Beta-prop_NUP159_NUP214
Beta-prop_WDR11_2nd
LisH_WDR26
Motif
Other DBs
NCBI-GeneID:
121574130
NCBI-ProteinID:
XP_041742673
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All DBs
Position
9:57276198..57310519
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AA seq
420 aa
AA seq
DB search
MVLSQRQRDELNRAIGDYLRSNGYEEAYSTFKKESELDMNEELDKKYAGLLEKKWTSVIR
LQKKVMELESKLNEAKEEMTLGGPVAQKRDPKEWIPRPPERYALSGHRSPVTRVIFHPVF
SVMVTASEDATIKVWDYEAGDFERTLKGHTDSVQDISFDQTGKLLASCSADMTIKLWDFQ
GFECIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWEVATGYCVKTFTGHREWVRMV
RPNQDGSLIASCSNDQTVRVWVANSKECKAELREHEHVVECIAWAPDTAHPTILEATGSE
SKKSGKPGPFLISGSRDKTIKMWDISTGMCLMTLVGHDNWVRGVLVHPGGRFIVSCADDK
TLRIWDYKNKRCMKTLCAHEHFVTSLDHHTKYKPTGMVLNGHPTWNSDSGLFLELRPEDH
NT seq
1263 nt
NT seq
+upstream
nt +downstream
nt
atggtgctgtcacagagacaacgagatgaactaaaccgagcgatcggagactacctccgc
tcaaatggctatgaagaagcctattccaccttcaagaaagagtctgagttagatatgaat
gaggagttagataagaagtacgctggtcttttggaaaagaaatggacctcagtcatcaga
ttacagaaaaaggtgatggagctggagtcgaagctgaacgaggccaaggaggagatgact
ctagggggtccggtggcccagaagagggaccctaaggagtggatcccccgtcccccagag
agatacgccctaagcggccaccgctcccccgtcacacgggtcatcttccaccctgtcttc
tccgtcatggtcaccgcttctgaggacgccaccatcaaggtgtgggactatgaggcaggg
gactttgagcggacactgaagggccatacagactctgtccaggacatctcctttgaccag
acgggcaagctgctggcctcctgttctgcagacatgaccatcaagttgtgggacttccag
ggctttgagtgcatccgcaccatgcacggtcatgaccacaacgtgtcgtctgtagcgatc
atgcccaacggagaccacatagtctccgcctccagagacaagaccatcaagatgtgggag
gtggccactgggtattgtgtgaagacgtttacaggccacagggaatgggtgaggatggtc
cggcccaaccaggatggttctctgattgccagctgttccaacgaccagacggtgcgtgtg
tgggtggccaactccaaggagtgtaaggctgagctacgggagcacgaacacgtggtggag
tgtatcgcctgggcccccgataccgctcaccccactatcctggaggctactggctcagag
agtaagaagagtgggaagcccggtccattccttatctctggctctagagataagaccatc
aagatgtgggacatcagcactggcatgtgccttatgactctggtaggtcatgataactgg
gtgcgtggtgtgttggtgcaccctggaggcaggttcatagtgagctgtgctgatgataag
actctgaggatctgggactacaagaacaagcgctgcatgaagaccctgtgtgcccacgaa
cactttgttacctctctagatcatcacaccaaatacaagcctactggaatggttttgaac
ggtcatccaacttggaattccgactctggcctctttctagagctccgacctgaagatcac
tga
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