Coregonus clupeaformis (lake whitefish): 121574139
Help
Entry
121574139 CDS
T08357
Name
(RefSeq) protein strawberry notch homolog 1-like isoform X1
KO
K26273
protein strawberry notch
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
cclu03036
]
121574139
Chromosome and associated proteins [BR:
cclu03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
121574139
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_34
Helicase_C_4
SBNO
ResIII
Helicase_C
OspG_kinase
Motif
Other DBs
NCBI-GeneID:
121574139
NCBI-ProteinID:
XP_041742691
LinkDB
All DBs
Position
9:complement(26312507..26333632)
Genome browser
AA seq
1412 aa
AA seq
DB search
MMDPGQDLLLAALSESGICPNDLFDFDPQDAALPSPTPQSISISALGVGSGMEPTGVTAP
PTPTVTIRHKPQASTTTFVLNQLNQLPSLGTIVVTKPSTGGTARHTITVTKVVHTTPSAL
RGSTSTLTSSTALPSVSTVVSSSREQIQLKDLLRTGGLKSSSLVELMRLKPPPDIAQPVA
TATGTKIILVSTKMIHKPVDLNNGIKEVSGKDAARIWVNDDVKVRSFSPTLKLPGMKEEE
EAEEEEDEELGHAETYAEYMPMKLRIGLRHPDPVVETSSLSSVNPPNVWYRMSIPEETID
RGWLSALQLEAITYAAQQHETFLPNGDRASYLIGDGAGVGKGRTIAGIIYENYLLGRKRS
LWFSVSNDLKYDAERDLKDIGAKNIPVYSLNKFKYGKISSKHNGSVKKGVIFATYSSLIG
ESQSGGKYKTRFKQLLHWCGQVFDGVIVYDECHKAKNVCPIGSSKPTKTGLAVLELQNKL
PKARVVYASATGASEPRNMAYMSRLGIWGEGTPFREFSNFIQAVERRGVGAMEIVAMDMK
LRGMYIARQLSFTGVTFKIEEVPLTTHYIKMYNKSVRLWVAAREKFQAAANLMDAEQRMK
KSMWGQFWSAHQRFFKYLCIASKVRRVVQLARDEVKNGKCVVIGLQSTGEARTLEALEEG
GGELNDFVSTAKGVLQSLVEKHFPAPDRQKLFSLLGIDLPAMKTPLPSEAAAEQKGKKRK
GAEIKKAEKRKRKSGGLSGSSSDDSESVESDKDYAESDDSFKSVSSGEDDEDDFNPFKDD
SSEDEEDDPWLSGKRKGVKKCKEKKNKKKKSIDPDSIHSALLASGLGSTRPAFTTPTVKT
SSTPAIAKVEVDDGCMTSQDAVEDAQQMKRDLLDQLEKLAQDLPPNTLDELIDELGGPDN
VAEMTGRKGRVVSNDDGSISYESRSELDVPVEILNLTEKQRFMDGEKNIAIISEAASSGI
SLQADRRVKNQKRRVHMTLELPWSADRAIQQFGRTHRSNQVTAPEYVFLISELAGEQRFA
SIVAKRLESLGALTHGDRRATETRDLSRFNFDNKYGRNALEIVMKSIVNLDFPLVNPPSN
FEGDFYKEIRHGLIGVGLINVEDRSGILSLDKDYNNIGKFLNRILGMAVQEQNALFQYFS
DTLAAVIQNAKKNGRYDMGILDLGSGDEKVKKMEAKKFLTPGYSTSGHVELYTVSVERGM
SWEDATHAWAEQSGPDDGFYVQIRNNKKTAILVKEVNSKKRLFLVYRPNTGKQLKLEAYA
DIKKKCKKVLSDDAKQHWIDQYKSSAEICSHAYWRGNCKKALVGLQCEVGLRCRTYYVLC
GSVLSVWTKVEGVLSSVSGTNIKMQIVRLRTEDGQRIVGLIIPANCVSPLTNILLSSDQS
QQLAVQQQQKWQQLHPQSLSHTHNMGSPPSPT
NT seq
4239 nt
NT seq
+upstream
nt +downstream
nt
atgatggatcctggacaggatttgcttctggcagccctgagcgagagcggcatctgccca
aacgacctgtttgactttgaccctcaggatgctgcactgccctctccaaccccacagtcc
atctccatcagtgccctgggtgttggctcggggatggagccaacgggagtcacagctcca
cccactccaacagtcacaatcaggcacaagcctcaggcctcaaccacaacatttgtctta
aatcaactgaatcagttgccatcgctgggaacaatcgttgtgaccaagccctcaactgga
ggcacggccagacataccatcacagtcaccaaggtagtccataccactccctcagccctg
cgggggtccacttccacactcacctcctccacggctctcccctcagtctccacagtggtt
tcttccagcagagagcagatccagctgaaggacttgttgaggacaggcggtctgaagagt
agtagtctggtggaactcatgaggctcaagccgccgccagacatcgcccagccggtcgcc
acagcaacaggcaccaagataatactggtctcgacaaagatgatccataaaccagtggat
ctgaacaacgggataaaggaggtgtcgggtaaagacgccgctcggatctgggtgaacgat
gacgtgaaagtgcggagcttctcacctacattaaaactcccaggaatgaaagaggaggag
gaggctgaggaagaggaggatgaagagttgggtcatgccgagacatatgcggagtacatg
cccatgaaattgcggatcgggctgcgtcacccagacccggttgtggagacaagctccctg
tccagtgtgaatcctcccaacgtgtggtacagaatgtcgataccagaggagaccatcgac
cgcggctggctgtctgccctgcagctggaggccatcacgtacgctgcccagcaacatgaa
acattcctccctaacggtgaccgagcgtcctatctgataggagacggggccggagtgggg
aagggccggaccatcgctgggatcatctacgagaactatcttctgggcagaaagagatca
ctctggttcagtgtttctaatgacctgaagtatgatgcagagagggatctgaaagacatc
ggagccaagaacattccggtctattccctcaacaagtttaagtatggtaagatctcgtcc
aaacacaacggcagtgtgaagaagggggtgatcttcgctacgtactcctctctgatagga
gagagccagtctggagggaagtacaagacccgcttcaaacagctgctccactggtgtgga
caggtcttcgacggagttattgtgtatgacgagtgtcacaaagccaaaaatgtctgtccc
atcggctcgtccaaacccaccaagactggactggccgtcctggagctgcagaacaaactg
cccaaggcacgggtggtgtacgctagcgcaactggtgcgtctgagccccgtaacatggcc
tacatgagccggctgggcatctggggggaggggacccccttcagagagtttagcaacttc
attcaggctgtggagcgccgaggtgtgggtgctatggagatagttgccatggatatgaag
ctgagggggatgtacatcgccaggcagctgagcttcacgggcgttacgttcaagatcgag
gaggttcccctgacaacccactacatcaagatgtacaacaagtctgttcgcctgtgggtg
gctgcgcgggagaagttccaggcggctgctaacctgatggatgcagagcagcggatgaag
aagtccatgtggggtcagttctggtcggcccaccagaggttcttcaagtacctctgcatc
gcctccaaggtccgcagggtggtgcagctcgccagggacgaggtcaaaaacggaaagtgt
gtggtgattggtctccagtcgacaggagaggccagaacactggaggccctggaggaagga
ggaggagagctcaacgactttgtctccaccgccaaaggtgtgctgcagtcacttgtagag
aagcacttcccagctccagacagacagaagctgttcagcctgctgggcatcgacctgccg
gccatgaagacccccttgcccagcgaggccgcagcagagcagaagggcaagaagaggaaa
ggtgctgagataaagaaggcagagaagaggaagagaaagtcaggtggtctgtcggggagc
agctctgacgacagcgaatcagtggagtctgataaggactatgcagagagtgacgacagc
ttcaagtcggtcagctcgggagaagatgacgaagacgacttcaaccccttcaaggatgat
tccagcgaggatgaggaggatgacccctggctgtctggaaagaggaaaggggtgaagaaa
tgcaaggagaagaagaataaaaagaagaagagcattgacccagactctatccacagtgcc
ttgttagcctctggcctgggctccaccaggcctgctttcaccaccccaacagtcaagacc
tccagcacacctgccatagccaaggtagaggtagatgacggctgtatgaccagtcaggat
gctgtggaagatgctcagcagatgaagagagatctgttggaccagctggagaagctggct
caggatctacctcccaacactctggatgaactcatagacgagctgggaggacccgacaac
gtggctgagatgactgggcgtaaaggccgggtggtcagtaatgatgatggcagcatctcc
tacgagtctcgctctgaactggatgttcctgtggagatcctcaacctcacagagaaacag
aggttcatggacggagagaagaacatagccatcatctcagaggcggccagctcgggcatc
tccctgcaggctgaccggcgagtgaaaaaccagaagaggagggtccacatgaccctggag
ctaccctggagcgcagaccgagccatacagcagtttgggaggacccacaggtctaaccag
gtgacggctcctgagtatgtgttcctcatctctgagctggctggggaacagaggtttgcc
tccattgtggccaagagactggagagcctgggtgccctcacccatggagacagaagagca
acagaaacgagagatctcagcaggttcaactttgacaacaaatatggcagaaatgccctg
gagattgtgatgaagtccatcgtcaacctggactttccgttagtgaatcctccatcgaac
ttcgaaggggatttctacaaagagatccgtcatgggttgatcggagtgggtctgatcaat
gtggaggacagatcagggatcctgtctctggacaaagactacaacaacatagggaagttc
ctgaaccgtatcctggggatggcagtgcaggagcagaatgctctgttccagtacttctct
gacacactggcagccgtcatacagaacgccaagaagaatggacgctacgacatgggcatt
ctggacctgggttctggggatgagaaggtgaagaagatggaagccaaaaagttcctgact
ccaggctactccacctccggacacgtggagctctatacggtgagtgtggagagaggcatg
tcctgggaggatgctacccacgcctgggctgagcagagtggtccagacgatggcttctat
gtacagataaggaacaacaagaagactgctatcttggtgaaggaggtgaacagtaagaag
aggctgttcctggtctacagacccaacacaggcaaacagctgaaactggaggcctacgct
gacatcaagaagaagtgtaaaaaggtgctgtcagacgatgccaagcagcactggattgac
cagtacaagtcttcagctgagatctgctctcatgcttactggcgtggtaactgtaagaag
gcgttggtgggtctgcagtgtgaggtgggtctgcgctgcaggacgtactatgtcttgtgt
ggctctgtgctcagcgtgtggaccaaggtggagggagtcctgtcctccgtcagcggaacc
aacatcaagatgcaaattgtccgtctcaggacggaggacgggcagaggatcgtgggcctg
atcattccagccaactgcgtctctcctctgaccaacatcctgttgtcgtctgaccagtct
cagcaactggctgttcagcagcagcagaagtggcagcagctgcaccctcagagcctcagc
cacacacataacatgggttcaccaccaagtccgacctga
DBGET
integrated database retrieval system
