Coregonus clupeaformis (lake whitefish): 121574184
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Entry
121574184 CDS
T08357
Name
(RefSeq) transcriptional regulator ATRX-like
KO
K10779
transcriptional regulator ATRX
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04110
Cell cycle
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09140 Cellular Processes
09143 Cell growth and death
04110 Cell cycle
121574184
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cclu03000
]
121574184
03036 Chromosome and associated proteins [BR:
cclu03036
]
121574184
Transcription factors [BR:
cclu03000
]
Eukaryotic type
Zinc finger
Cys4 GATA-factors
121574184
Chromosome and associated proteins [BR:
cclu03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
121574184
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
ADD_ATRX
Helicase_C
C5HCH
Vps8_C_schizo
Motif
Other DBs
NCBI-GeneID:
121574184
NCBI-ProteinID:
XP_041742760
LinkDB
All DBs
Position
9:complement(9375334..9412897)
Genome browser
AA seq
1870 aa
AA seq
DB search
MSAEMLSVPPGTSKLDVLVTKLHEFLAHAPEEDEDTLVTESPDGDNCITNKDCVAAHSTD
RTPLEPQQTSTEALKQSGCGSRRKPSVVIKHSGLDESGASNESEDDDDGLKINSNGYPDI
TRLPKGTVLVRPEPVENVRDDFRGPEFRCGKSGNLKRAFSRRRGGGEHLEIVSCTACGQQ
VNHFQRDSFYQHPVLKVLICKSCFKYYSSDDISKDCDGMDEQCRWCAEGGNLICCDFCPN
AFCKKCILRNLGRKELSGILDEESKWYCYVCSPEPLLDLVVACDNVLDNLGHLWPDHRKR
GRGEGKSGHYDSHPRHSQNNSVGHWNHSGMDGHVVFNYNTLQIPEEMAKKAKNLVDSTNT
VNTTFVKFIQGGMQQKQTTEVKLQYLKTFQSVLKGLKKSQTALEEALLEEFREMGLPNGG
ENPTFDDTDVPQQEQESCVEIDISEKNGLHYLKKIAAEHLEENDSDSNGFTDDGRPSSSI
EMKGVLGTEIMPRRGRGRPRKNSKPGEDACNVTKQLVVQISPAPVEIEPLSGPPELEVEV
ELEAEEEERKEKVEEIEGDCESIELVTEGEYESAEGSESLELEEEPDNRRSPRVKTTPLR
RPGDGKTQPTPSGADSESDSDPDTSPSAEVPQGADEGGLGRGIDDSDSDEVPAVLQRAAM
TRSSDEAESDDGDHRSVTKKCLFGLKKNTPLSPERVVRKRKVPDCSSDSDSSSDDPDLQK
EIKTMSSRPRGRPRKVKREDEPTQSKESPQHRPRGRPRKVKKEDESTSSKEGNTQVAKPK
STPQSEQRTKQTPSSSSQEEGDQDSESSDYSCDQKIKPITEEVALLGAAAFHQSSGDEEQ
PQSGPSWAAAEDDDDPENRIAKKMLLAQIKANYSSGEDFSSDVESSHDDESDREEKEKEV
RKDESSDENGETSSLTSDSESSKTRHRHRLLRHKLSLDDGNPSDQKTAEEKGIEQIVRKS
RRTKGEKLDSQSSDDDDSQSEQEESGMSEELSQSENEALHHLPLESRRNPSLVIYRRSSN
HHILCCLTPVGISDDEEKDGVEGDNKGTPKGRKKIRRIILDEHLRSETQIALKEEEERCR
RLAEREQREDFREVIVFKDEASHLACPITTKLVLDQDEGTKEPLIQVHRNLVTRLKPHQV
DGVQFIWDCCCESVKKANSTSGSGCLLAHCMGLGKTLQVVTFLHTMLQSKCMNFRTALVV
CPLNTILNWVNEFDKWQVDMVADKVKVTELATLKRPQEHYIALQRWQKDGGVMIMGYEMY
PNLTLGLKVTHRKFKKTFDSTLVDPGPDFVICDEGHILKNEVSNISKAMNAIKTKRRVVL
TGTPLQNNLNDYHCMVNFIKENLLGSIKEFRNRFINPIQNGQCADSTPRDVRIMKNRTHV
LHAMLAGCVQRRDYSTLTKFLPPEHEYVMAVRYRLYRYYLDNFTGAGSVVEGARGKAGTS
LFKDFQILSRIWTHPWCLQLNYISKENKGHFDGKHQGKTKRKEKKNKGKVVNADEDRNDV
EVILVWNSTSKGVNVEGDQRAGPLVPMVEAVRASTSLRPDSPAADWYKSMLSDSDATILE
HSGKMVLLFEILRMAEELEDKVLVFSQSLISLDMIEDFLDLANKAKNNGQSSLYKGDGSW
IRNTDYYRIDGSTSATSRMKWAEEFNDATNERGRLFLISTRAGSLGINLVAANRVIIFDA
SCNPSYDIQSIFRVYCLGQLKAVFVYRFLAQGTMEEKIYDRQVAKQSLSFRVVDQQQIQR
HFTLFELTELYMFEPDLLDDPNSEKKSKRTTPLLPKDMVLAELLQSCKEQIVCYHEHESL
LDHKEEEELSEADRKTAWAEYEAEAAHSNTNVPGPSTSTMAASMSSLYNKTNGQLKNMIY
SSREKVSEAI
NT seq
5613 nt
NT seq
+upstream
nt +downstream
nt
atgtccgcagagatgctcagcgttcctcctggcacgagcaagctcgatgtgttggtgacc
aaactgcatgagttcttggctcatgctccagaggaagatgaggacacactggtgacagaa
agtcctgatggtgataactgtataacaaacaaggactgtgtggcggcacactcaacagac
cgaacccctcttgagcctcaacagacctcaacagaagccttgaagcagtctggatgtggt
tccaggagaaaaccttcagttgtgattaaacacagcggactggatgaatctggtgcttca
aatgaaagtgaggatgatgatgacggcttgaaaatcaattcaaatggttatcctgatata
acaagattaccgaaaggcactgtactggtgaggcctgagccggtggaaaatgtcagagat
gacttcagaggtcccgaattccgttgcggaaaatctggcaatctgaagagagctttttcc
aggagacgtggaggcggtgaacacttggagattgttagctgtacagcctgtggccagcaa
gttaaccacttccagagggactccttttatcagcatccagtactcaaagtacttatttgc
aagtcttgtttcaagtattactcaagtgatgacatcagcaaggattgtgatggcatggat
gaacagtgcagatggtgtgcagaggggggaaacctgatctgctgcgacttttgccccaac
gccttctgtaagaaatgcattttgcggaacttggggcgaaaggagctgtctggcatcctg
gatgaggagagtaagtggtattgctacgtgtgcagcccagagcctctactggacctggtc
gttgcctgtgacaacgtccttgacaacttggggcatttgtggccagaccaccgcaagagg
ggcagaggcgagggcaaatctggacattatgactctcatccaaggcattctcaaaacaat
tccgtgggtcattggaaccatagtggcatggatggtcacgttgtgttcaactacaacacc
cttcaaattccagaggagatggccaaaaaggctaaaaacctggtggactctacaaacacc
gtaaacacaacttttgtgaagttcattcaaggtggcatgcagcagaaacagacaactgag
gtaaagctccaataccttaagactttccagtcagtactgaagggtctgaagaagtctcag
acagctctggaggaagcccttttggaggagttcagagagatgggtttgccaaatggtggg
gaaaacccaacgtttgatgatactgatgtacctcaacaagaacaagagagttgtgtggaa
attgacatttctgaaaaaaatggcctacattacttaaagaaaattgcagctgaacatttg
gaagagaatgattcagactcaaatggctttacggacgatggaaggccttcgtcctcaatt
gaaatgaaaggtgtccttggcacagagataatgccccgacgaggtagaggcaggccgcgg
aaaaactcaaagcccggagaagatgcttgcaacgtgacaaaacaactggtggtgcaaatt
tcacctgcccctgttgaaatagagccgctctctggccccccggagttggaggtggaagtg
gagttggaggcggaagaggaagagagaaaagaaaaagtggaggaaatagagggagactgt
gaatctattgaacttgtaacagagggggagtatgaatctgctgagggaagcgaatctctg
gaactggaagaggaaccagataatagacgctcacctcgggtaaagaccacgcccttacgc
aggccaggtgatggcaagacccagcctaccccctcaggtgcggacagtgagagtgactca
gaccctgacaccagccccagtgctgaagtgcctcaaggagctgacgagggagggcttggg
agaggaattgatgactctgactccgatgaagtccccgctgtcctccagcgggcagccatg
acgcgcagttcagacgaagccgagagtgacgatggagaccatcggagcgtgaccaagaaa
tgcctcttcggcctgaagaagaacacgcccctctctccagaaagagttgtccgcaaacgc
aaggtgccagactgctcctctgactccgactcctccagtgacgatccggacctgcagaag
gagatcaagactatgagcagcaggcccagggggaggcctcggaaggttaagagagaggat
gaacctacccaaagcaaggagagtccgcaacataggcccaggggcagacctcggaaggtc
aagaaagaggatgaatctacatccagcaaggagggtaatacccaggtagccaagcctaaa
agcacacctcaatccgagcagagaacgaagcagacgccatcctcttccagtcaagaagag
ggggaccaggactctgagtcaagcgattacagttgtgaccagaagatcaagcctatcact
gaggaggttgccttactgggggcagcagctttccaccagtcgtccggcgatgaagaacag
ccccagtctgggccttcttgggcagcagcagaagatgatgatgatccagaaaatagaatc
gctaagaaaatgctcttggcccaaatcaaagccaactactcatcgggggaggatttctct
tcagacgtggagtcatcacatgatgatgaatctgacagggaagagaaggaaaaagaagtt
cggaaagatgaaagctctgatgagaatggggagacctccagtttaacctctgactctgag
tccagtaaaactcgtcacagacatcgtctgctacgccacaagctcagccttgatgatgga
aatccaagtgatcagaaaaccgctgaagaaaaagggattgagcagatagtcaggaagtct
agaagaaccaaaggtgagaaattggatagccagagtagtgatgatgatgatagccaatca
gagcaagaagagtctggtatgagtgaagagctgagccaatcagagaacgaggctctacat
catctacctctagagtcgagaaggaatccgtccttagttatctacagaagaagcagcaac
catcatatattgtgctgtctgactccagtggggataagtgacgatgaagagaaggacggc
gtggaaggggacaacaaaggtacacctaagggccgcaagaagatccgcaggataatctta
gacgagcacctccgctcagagacccagatagccctgaaggaggaggaggagagatgcaga
cgcctggcagaaagagagcagagggaggacttcagagaggtgattgtttttaaggatgag
gcgtctcacttggcctgtcccatcaccactaagctggtcctggatcaggatgaggggacc
aaggagccactcatccaggtgcacaggaacctggtgaccaggctcaagcctcaccaagta
gatggtgtgcagtttatctgggactgttgttgtgagtctgtgaagaaggccaattcaacc
tctggatcaggctgcttactggcccactgcatgggcctagggaagacactgcaggtggtg
acatttctccatacgatgctgcagtcaaagtgcatgaacttcaggactgccctggtggtg
tgtccactcaacaccatcctcaactgggtcaacgagtttgacaagtggcaagttgacatg
gttgctgacaaagtcaaggtgacagagttggccacactgaagcgaccacaggagcattat
attgccctgcagagatggcagaaggatggtggtgttatgatcatgggctatgagatgtac
cccaacctcactctaggcctcaaagtcacccacagaaaattcaaaaagacctttgacagc
acactggtcgatccaggtccagactttgtgatctgcgacgagggtcacatcctgaaaaac
gaggtgtccaacatctccaaagctatgaatgccattaagaccaaacggagggtggtgctg
acaggcacaccactgcagaacaacctcaatgactaccactgcatggtcaacttcatcaag
gagaaccttctgggctcaatcaaggagttccggaatcgctttatcaaccccattcagaat
ggccagtgtgcagactccacccccagagatgtccgcatcatgaagaatcgcacccatgtc
cttcatgcaatgttggcgggatgtgtacagagaagagactactcaaccttgaccaagttc
ctgccccctgaacatgagtatgttatggcagtgaggtacagactgtatcgctactacctg
gacaacttcactggagcagggtctgtggttgaaggagccaggggcaaagccggaaccagc
cttttcaaggacttccagatactcagccgaatctggacccatccctggtgtctgcagctc
aactatatcagcaaagaaaataagggccattttgatgggaagcaccaggggaaaaccaag
aggaaagagaagaagaacaaggggaaagtggtgaatgctgatgaagaccgcaatgatgtg
gaggtgatcctggtgtggaacagcacatcaaagggtgtcaatgtggaaggagatcagcga
gcaggtccactggttccaatggtagaagcagtgagagcgtccaccagtctcaggcctgac
agtccggctgcagactggtacaaatcgatgctgagtgactctgacgccaccattctggaa
cactcagggaagatggtgctgctgtttgagattctccgaatggcagaggaactggaagac
aaagtgttagtgttcagtcaatccttgatctcattagacatgattgaagatttcttggac
ctcgccaacaaagccaaaaacaacgggcaatcatccctatacaaaggtgatggcagctgg
atcagaaatactgactattaccgtattgacggttccaccagcgctacatccaggatgaag
tgggctgaagagttcaatgatgccaccaatgagcggggtcgtctgtttctcatctcgaca
agagctgggtcccttgggatcaacctggtagcagctaacagggtcatcatatttgatgct
tcgtgtaacccctcctatgacatccagagcatcttcagggtgtactgtttaggccagctg
aaggctgtgtttgtctaccgcttcttggctcagggcaccatggaggaaaagatctacgac
cggcaggtggccaagcaatcactgtcgttccgggtggtggaccagcagcagatacagcga
cacttcacactgtttgaactgacagagctctacatgtttgagccagacctgctggatgac
cccaactctgagaagaagagcaagaggaccacacctctgctgcccaaggacatggtgctg
gcagagctgctgcagagctgtaaggagcagatcgtctgctaccatgaacacgagtccctg
ctggaccacaaagaagaggaggagctcagtgaggcggaccgcaaaactgcctgggctgag
tacgaggcagaggcagcacacagcaacaccaacgttcccggcccctccacctccactatg
gctgccagtatgtcatccctgtacaataagactaatgggcagctgaagaacatgatttat
tccagccgtgagaaagtcagcgaggccatctag
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integrated database retrieval system
