KEGG   Coregonus clupeaformis (lake whitefish): 121574443
Entry
121574443         CDS       T08357                                 
Name
(RefSeq) transcription factor SOX-30
  KO
K09271  transcription factor SOX15/30
Organism
cclu  Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:cclu00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:cclu03000]
    121574443
Transcription factors [BR:cclu03000]
 Eukaryotic type
  beta-Scaffold factors with minor groove contacts
   HMG SOX
    121574443
SSDB
Motif
Pfam: HMG_box HMG_box_2
Other DBs
NCBI-GeneID: 121574443
NCBI-ProteinID: XP_041742997
LinkDB
Position
9:complement(50295350..50305805)
AA seq 634 aa
MDRHPMRRAQITFKKSEQCKNEDDSGPPPSKKNANESECPASSTERHRGDGEQKRPVGRP
KGSGRSGNNVSEDVQVRPKVIFKAESKWGGDGALMPTCSTHLKGAIQGRPVTFEKERASS
SVSKQSKATSDHPTTSQVLEIITPAPGQAKVKVVQELATTYRQGCPPVTPTIDFSKPIHV
VHENGMTFTVLDGKAITLSKVPYPSPVHVNVQPPPVKVKTRGMNLTMPPSEAENLEVPRS
VDRNGYIKRPMNAFMVWARIHRPALSKANTTANNADISVQLGVEWTKLTEEEKRPYYEEA
RKLKDKHRQEFPGWIYQPRPGKRKGYPSVMSFAPQPSSCSAGTSGPGAESYPMTMTTMAT
TTTSSCVPYTRATGSNGVQVTTTAAPNASQSTSPVSIFFQTTSSPHPTATPSGGKPAERK
REASPFASNPEVAPKPRKICRQQAYYSSASEMPSTSMASSSRGLQMPLPNMAHPHMYPPS
PMPHPAGLFPTPRFPFAPPYFMPGPNFYPPGSYPYPHGPYSYPVLQPQEFSNPMVTPMVT
PGYPYDDNYDQHESTFSLLNRDYPFLQSGECGQRCQGQEQAPTASELLGLVPPLDLRALE
NVFTNSAPDNSASVQEVQVTNEEDEEEVPVMRIL
NT seq 1905 nt   +upstreamnt  +downstreamnt
atggacaggcatcccatgcgaagagcacaaattacattcaagaaaagtgaacaatgtaaa
aacgaagatgacagtgggcctccacctagtaagaaaaatgctaatgaaagcgagtgccct
gcatcttcaacagagaggcatcgaggtgatggagaacagaagagaccagtgggtaggcct
aaaggcagtggacgttctggaaataacgttagtgaagatgttcaggtcaggcctaaagtt
attttcaaagctgagagtaaatggggtggtgatggagctctaatgcccacatgttcaaca
cacctcaagggagccattcaaggtcgacccgttacatttgaaaaggaaagagcatcatca
tcagtcagtaaacagagtaaagccacatctgatcatcccacgacctctcaagtgttggag
atcatcacacctgctccaggtcaggccaaggtcaaagttgtccaagaactggcaacaacg
tatcgtcaaggatgtccacctgtgactcccactatagacttctccaaaccgatccatgtt
gtacatgaaaatgggatgaccttcacagtattggatggtaaagccataacgctcagcaaa
gtaccatacccatcacctgttcatgtgaatgttcagccacccccagtaaaggtgaagaca
agagggatgaatctcaccatgccaccatcagaagcagaaaatctggaagtaccacggagc
gtagacagaaatggctacatcaagaggcctatgaatgcgttcatggtctgggcaagaatc
cacaggcctgccctgtccaaggccaacacaacagccaacaatgcagacatcagtgtgcaa
ctaggagtagagtggaccaagctcaccgaggaagagaagaggccctactatgaggaagca
cgtaaactcaaagacaagcacagacaggagttccctggttggatctatcagcccagacct
ggaaaaagaaagggctacccttctgtgatgtcctttgccccccaaccatcctcctgctct
gcagggacaagtggtcctggggctgagtcttatcccatgaccatgacgactatggccacc
actaccaccagctcctgtgttccatacacacgggccacaggctctaatggtgtccaggtg
actacaacggcagctccaaacgcctctcagagtaccagcccagtctccatattcttccag
actacttccagcccccacccaacagccacaccctctggtggtaagcctgcagaacgcaag
cgtgaagccagcccctttgccagcaaccctgaagtagctcccaaacccaggaaaatctgc
aggcaacaggcgtactacagttctgccagtgagatgccctcaacaagcatggcatccagc
tccagaggtctccaaatgccactccctaacatggctcaccctcacatgtatcctccatct
cccatgccacatccagcgggcctcttccccacccctcgctttccctttgcgccaccctac
ttcatgcctggacccaatttttatccaccaggatcatacccttacccacacggcccatac
tcttacccagttctccaaccccaggaattctccaaccccatggttactcccatggttact
ccgggctacccctatgatgacaactacgatcagcatgagtccacattttcccttctcaac
agagactacccgtttctgcagagtggagagtgcgggcagagatgtcaaggtcaagagcag
gcccccactgcctctgagcttctaggtttggtcccaccactggacttacgtgccctggag
aacgtattcaccaactctgcgccagataactctgccagtgtccaggaggtccaagtcacc
aatgaggaggacgaggaagaagtgcctgtgatgagaattctctag

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