Coregonus clupeaformis (lake whitefish): 121574443
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Entry
121574443 CDS
T08357
Name
(RefSeq) transcription factor SOX-30
KO
K09271
transcription factor SOX15/30
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cclu03000
]
121574443
Transcription factors [BR:
cclu03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
121574443
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
HMG_box
HMG_box_2
Motif
Other DBs
NCBI-GeneID:
121574443
NCBI-ProteinID:
XP_041742997
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Position
9:complement(50295350..50305805)
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AA seq
634 aa
AA seq
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MDRHPMRRAQITFKKSEQCKNEDDSGPPPSKKNANESECPASSTERHRGDGEQKRPVGRP
KGSGRSGNNVSEDVQVRPKVIFKAESKWGGDGALMPTCSTHLKGAIQGRPVTFEKERASS
SVSKQSKATSDHPTTSQVLEIITPAPGQAKVKVVQELATTYRQGCPPVTPTIDFSKPIHV
VHENGMTFTVLDGKAITLSKVPYPSPVHVNVQPPPVKVKTRGMNLTMPPSEAENLEVPRS
VDRNGYIKRPMNAFMVWARIHRPALSKANTTANNADISVQLGVEWTKLTEEEKRPYYEEA
RKLKDKHRQEFPGWIYQPRPGKRKGYPSVMSFAPQPSSCSAGTSGPGAESYPMTMTTMAT
TTTSSCVPYTRATGSNGVQVTTTAAPNASQSTSPVSIFFQTTSSPHPTATPSGGKPAERK
REASPFASNPEVAPKPRKICRQQAYYSSASEMPSTSMASSSRGLQMPLPNMAHPHMYPPS
PMPHPAGLFPTPRFPFAPPYFMPGPNFYPPGSYPYPHGPYSYPVLQPQEFSNPMVTPMVT
PGYPYDDNYDQHESTFSLLNRDYPFLQSGECGQRCQGQEQAPTASELLGLVPPLDLRALE
NVFTNSAPDNSASVQEVQVTNEEDEEEVPVMRIL
NT seq
1905 nt
NT seq
+upstream
nt +downstream
nt
atggacaggcatcccatgcgaagagcacaaattacattcaagaaaagtgaacaatgtaaa
aacgaagatgacagtgggcctccacctagtaagaaaaatgctaatgaaagcgagtgccct
gcatcttcaacagagaggcatcgaggtgatggagaacagaagagaccagtgggtaggcct
aaaggcagtggacgttctggaaataacgttagtgaagatgttcaggtcaggcctaaagtt
attttcaaagctgagagtaaatggggtggtgatggagctctaatgcccacatgttcaaca
cacctcaagggagccattcaaggtcgacccgttacatttgaaaaggaaagagcatcatca
tcagtcagtaaacagagtaaagccacatctgatcatcccacgacctctcaagtgttggag
atcatcacacctgctccaggtcaggccaaggtcaaagttgtccaagaactggcaacaacg
tatcgtcaaggatgtccacctgtgactcccactatagacttctccaaaccgatccatgtt
gtacatgaaaatgggatgaccttcacagtattggatggtaaagccataacgctcagcaaa
gtaccatacccatcacctgttcatgtgaatgttcagccacccccagtaaaggtgaagaca
agagggatgaatctcaccatgccaccatcagaagcagaaaatctggaagtaccacggagc
gtagacagaaatggctacatcaagaggcctatgaatgcgttcatggtctgggcaagaatc
cacaggcctgccctgtccaaggccaacacaacagccaacaatgcagacatcagtgtgcaa
ctaggagtagagtggaccaagctcaccgaggaagagaagaggccctactatgaggaagca
cgtaaactcaaagacaagcacagacaggagttccctggttggatctatcagcccagacct
ggaaaaagaaagggctacccttctgtgatgtcctttgccccccaaccatcctcctgctct
gcagggacaagtggtcctggggctgagtcttatcccatgaccatgacgactatggccacc
actaccaccagctcctgtgttccatacacacgggccacaggctctaatggtgtccaggtg
actacaacggcagctccaaacgcctctcagagtaccagcccagtctccatattcttccag
actacttccagcccccacccaacagccacaccctctggtggtaagcctgcagaacgcaag
cgtgaagccagcccctttgccagcaaccctgaagtagctcccaaacccaggaaaatctgc
aggcaacaggcgtactacagttctgccagtgagatgccctcaacaagcatggcatccagc
tccagaggtctccaaatgccactccctaacatggctcaccctcacatgtatcctccatct
cccatgccacatccagcgggcctcttccccacccctcgctttccctttgcgccaccctac
ttcatgcctggacccaatttttatccaccaggatcatacccttacccacacggcccatac
tcttacccagttctccaaccccaggaattctccaaccccatggttactcccatggttact
ccgggctacccctatgatgacaactacgatcagcatgagtccacattttcccttctcaac
agagactacccgtttctgcagagtggagagtgcgggcagagatgtcaaggtcaagagcag
gcccccactgcctctgagcttctaggtttggtcccaccactggacttacgtgccctggag
aacgtattcaccaactctgcgccagataactctgccagtgtccaggaggtccaagtcacc
aatgaggaggacgaggaagaagtgcctgtgatgagaattctctag
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