Coregonus clupeaformis (lake whitefish): 121574537
Help
Entry
121574537 CDS
T08357
Name
(RefSeq) nuclear receptor corepressor 1-like isoform X1
KO
K04650
nuclear receptor co-repressor 1
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04350
TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
121574537
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
cclu01009
]
121574537
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
cclu03036
]
121574537
Protein phosphatases and associated proteins [BR:
cclu01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
121574537
Chromosome and associated proteins [BR:
cclu03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
SMART complex
121574537
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GPS2_interact
Myb_DNA-binding
Myb_DNA-bind_6
LOB
Motif
Other DBs
NCBI-GeneID:
121574537
NCBI-ProteinID:
XP_045078559
LinkDB
All DBs
Position
9:complement(40274702..40402770)
Genome browser
AA seq
2540 aa
AA seq
DB search
MSSSSGYPPTQGSFSSEQSRYPPHSVQYTFSTTRHQQEFTVPDYRGHLQDQQGRRRPSLL
SEFHPGTERPPERRHGYEQQFHSVTSQQQTDAHEALEAKRPRMETVSEAHFSHGALPGGI
VLPLQSHQVQDSLRASGGEVKKENQFSGMKAESQSPGGLHRVGEEQDGSPSKLSKEELIQ
SMDRVDREIAKVEQQIFKLKKKQQQLEEEAAKPVEPEKPVTPPPIPQEHNKHRSIVQIIY
DENRKKAEEAHKIFEGLGPKVELPLYNQPSDTKVYHDNIKTNQVMRKKLILFFKRRNHAR
KQREQNICQRYDQLMEAWEKKVERMENNPRRKAKDSRTREYYERQFPEIRKQREQQERFQ
RVGQRGTGMSATIARSEHEISEIIDGLSEQENNEKQMRQLSVIPPMMYDTEQRRVRFLNM
NGLMDDPMKVYKARQFMNVWTEHEKEIFKEKFVQHPKNFGLIASYLERKCVSDCVLYYYL
TKKNQNYKTLVRRNYGRRRGRNQQITRPSQEEKSDDKIEEEKSEKSEKKEDEQNKEEEEK
DEKEDSRDIGKDKDKCDGGEDEDGKEQNTPRGRKTANSQGRRKGRITTRSMANEAASVAA
EEPLPPASAPEPALPPEPPQPPKPEPTTQKAVREPTKSAPGGPPMDHNKGALGTAATANT
ETGETSRWTEEEMEVAKKGLVEHGRNWSAIAKMVGTKSEAQCKNFYFNYKRRHNLDNLLQ
QHKQDTRRARGDRDPSQSESMASADDDENPEDSDGGENSSDTESAPSPSQADPSKARGDS
QMGDIAGGSENQRSDQDQASDGKGQDPPYGELRVKLEKSPEGEARDPDSQEDQDRERARA
AYEGQVHPKSEPQELDMKPGGAEVQVKVEPDSAKEKGDNGEHGERERQREGHHSDNDSSA
TCSADEDVDTEPERQRMFSSMDKPSLLSPPGSVLMSTAKQAHLNMQQHQQRAATIPPMVS
HYSNPHFSMIRYAHSERQAHGGRQEGESMSYLDQPTRQVGPFSTGGMTMGAPLSGFAMFQ
HQIKAVHESAHAEDKQRQDQADPEHSRQPPHCPRFTTRSPTVLDREGKPFPYMPYEMKMA
LEQEAQSGRPGSPYRLSPRDMSKASPQPNDPNASRYSVPPVLHPAPNQVVQSLPDGVRVT
FSRHSRPANIPSPPPLIPTSKPTDKPSFIQGGSISQGTPGTYLPSHAVYGGPEGAKSSVG
SISLGLPRQQDPTKPVSYIKQEECSPRGQSEGLLSQMQYEGVVRGGPMDGGISRGNPARG
SITQGTPALSGSSIAADLLKGTITKLATEDLSSPEKDREQLAKGHVIYEGKSGHILSYDA
IKNPREATCSPRPGHELKRSHDMMESARGHTGREGAPFEGLIIRALPRESPHGESKERPM
MTGSIMQGTPRTSAEAYEESMKYGKQIKRESPPIRSFEGGIGKGKPYEGVNTIKEMGRSI
HEIPRQDQPGQDPRKTPDMAANNRAAMEGSISQGHPLSQSAIKHNVKSLITSPIRLPQGP
TMPQLEAMERAKYEESKAAAEQQQRARHTSVVNSATSVLRSTHQEQGKSQLSPGMYQDTD
ARRTPVNYSSSSMSRGSPMLGRGQEGSGKPASHDRKSAMTPNQRDSVPAKSPVSGGDPNH
PMASHSPFDPHHRPMAPGEPRFHLPPHLDPALFHRAVLDPAAYMFPRQPSPTGYHNTYQL
YTMENTRQTILNDYITSQQMQVIPRPDVPRGLSPREQQQIAISYPPGARGIIDLAQMPPT
ILLPHPGGTGPPTMDRITYIPGAQPPFPPRPFNPASISPVCFFVSTGHQAHLAATAAACQ
ERERERERERERERDREHREKEREKEREREHREREREREQEHRQRERERVVAAAVANDYM
RGGPGQPDRPGSRGYLRSPSPSMRSQEAQQQRPSIFQGANSKGVITPLMPSAAAAQAGSR
YSTAADALAALVDAAASAPQMDVNKGKDSSKHDQDDDMSSSSSSPVAVTRRQHEQQQEAD
RRSMQSPYMSLPGGKPHPGYAEGPGGPQGSKDKGPPTKSRIEEELRTRGKTTITAANFID
VIIKRQIASDKDSRERGSQSSDSSSSLSSSRYEVPSGGAIEVISPANSPAQAQQEKQQQD
DRERADRDRAAQAASQAAGMRPFDMSRYRQSAESQQPPSSQADGGYSQSQQVPKTHRVMT
LADHISHIITQDFARNQDPPQSSTTFQSAQLPVSSSGRAKGHSRYSPENQTQAPSHHQRP
TPSRVSPENAPDKPRARPGKSPDRGGRGAVESYEPISPPQSYQDKQQETREQQQQQPQRR
EADQPEMRGDSRSPGSVSYLPSFFTKLENTSPMVKSKKQEIFRKLNSSGVGDSDVGNAQP
GTEIFNLPAVTSSSSVNPRNHSFSDPASNLGLEDIIRKALMGNLEERPEEHQGGPQPSSN
TPSNEARQEANPSPSMGKQKLQSKANSRKSKSPNPGQAYAAGGERPSSVSSVHSEGDYHR
QAPGWAWEDRPSSTGSMQFPYNPLTMRMLSSTPPTSMASPSMQAQQPPPGGPPGCQQQQR
VWEREPLLSEQYETLSDSDD
NT seq
7623 nt
NT seq
+upstream
nt +downstream
nt
atgtccagtagctcgggctacccccctacccaggggagcttcagcagcgagcagagccgc
tacccaccacactctgtccagtacaccttcagcaccacacgtcaccaacaggagttcact
gtcccagactaccgaggtcacctgcaggaccagcagggtcgacgaaggccttccttgctt
tctgaattccaccctggaactgagaggcctccagagagacgtcatggctacgagcagcag
ttccacagcgtcacctcccagcagcagaccgacgcacacgaggccctggaggccaagcgg
ccccgcatggagaccgtctccgaggcccacttttcccacggtgcactgcccggaggcatc
gttctgcccctgcagtcccaccaggtccaggacagcctcagagcctccggaggggaggtc
aagaaggagaaccagttcagtggcatgaaagccgagtcccagtccccaggagggctgcac
cgtgtgggggaggagcaggacggctcgccctccaaactgtccaaggaggaactaatccag
agcatggaccgtgtggacagagagatcgctaaagtggagcagcagatcttcaagctgaag
aagaagcagcaacaactggaggaggaagcggcgaagccagtggagccagaaaagccggtg
acccctccccccataccacaggaacacaacaaacaccgcagcatcgtccagatcatctat
gacgagaacaggaaaaaagctgaagaggcccataagatattcgaaggtcttggtcccaag
gttgaactgcccctttataaccagccgtcggatactaaagtataccatgacaacataaag
actaatcaagtgatgaggaagaagctgattctgtttttcaagagaaggaaccatgctcgt
aaacaaagggaacagaacatctgccagcgctacgaccagctgatggaggcgtgggagaag
aaggttgagcggatggagaacaacccgcgtcgcaaggccaaggatagccgcaccagggag
tactacgagagacagttccctgagatacgcaagcagagagagcaacaggagcgcttccag
agggttggtcagagaggaactggaatgtctgcgaccatcgccagaagcgagcatgagatt
tctgaaatcatcgacggcctttctgaacaggagaacaacgagaagcagatgagacagctg
tccgtcatcccgcccatgatgtatgacacagagcagaggcgagtcaggttcctcaacatg
aacggcctgatggacgacccaatgaaggtgtacaaggctcggcagttcatgaatgtgtgg
accgaacacgagaaggagattttcaaggaaaagtttgttcagcacccaaagaattttggc
ctcattgcttcctatctagagagaaagtgtgtgtccgattgtgtcctgtactactacttg
accaagaagaaccagaactacaagacactggtgagacgcaactacgggagacggcgaggg
agaaaccagcaaataacacgaccctcacaagaagaaaagtcagacgacaaaatcgaagag
gagaaatcggagaagtcagagaaaaaagaggacgagcagaataaggaagaggaagagaaa
gatgaaaaggaggactccagggacatcggcaaagacaaagacaagtgtgacggtggggag
gacgaggacggaaaggagcagaacacgccgcgcggcagaaagaccgccaacagccagggc
cggcgcaagggaaggatcaccacgcgctccatggccaacgaggctgcctccgtggcggcc
gaggaaccactgccgccggcctccgcccctgagcctgccctgcctccagagcctcctcag
ccccccaaacctgagcctactacacagaaggcagtgagagagcccaccaaatctgcacca
ggtggaccccccatggaccataacaaaggagcattaggaactgctgccaccgcgaacact
gaaaccggtgagacttctcgctggaccgaggaggagatggaggtggccaaaaaaggcctt
gtggagcacgggcgtaactggtcagccattgccaagatggtgggcactaagagcgaggct
cagtgcaagaacttctacttcaactacaagagacggcacaacctggacaacctgctccag
caacacaagcaggacacccggcgggcacggggtgatcgggacccgtctcagagcgagagc
atggcctcagctgacgacgacgaaaacccagaggatagtgacggtggagagaacagctca
gacacagagagtgccccgtccccgtcccaggcggacccctccaaggccagaggagactcc
cagatgggagacattgctggagggtcagagaaccagcggtcagatcaggaccaggccagc
gatgggaagggccaggatccgccatacggggagctgagggtcaagctggagaagagccct
gagggagaggccagagaccctgactctcaggaggaccaggacagggagagggcccgggcg
gcctacgagggccaggtgcatcccaagagtgagccccaggagttggacatgaagcctggg
ggtgctgaggtgcaggtgaaggtggagcctgactcggccaaggagaagggggacaatggg
gagcatggggagagagagaggcagagggaggggcaccactcagacaatgactccagcgcc
acctgcagcgcagacgaggatgtggacactgagcccgagagacagaggatgttctctagt
atggacaagccttcgttactcagccctcctggctcagtgctgatgtccacggccaagcag
gcccacctcaacatgcagcagcaccagcagcgcgccgctaccatcccgcccatggtcagt
cactatagcaacccacacttttctatgatcagatatgcccattcggagaggcaggcacac
ggaggcaggcaagagggtgaaagcatgtcttatttagaccaacctacccgtcaagtgggt
cctttcagcactggtgggatgacaatgggagcccccctcagcggcttcgccatgttccag
caccagatcaaggcggtgcacgagtcggcccacgcggaggataaacagagacaggaccag
gccgaccccgagcacagcagacaacctccccactgcccgcgcttcactacccgcagcccc
actgtactggacagggagggtaagcccttcccctacatgccttatgaaatgaagatggct
ctggagcaggaggcccagtctggtcggccaggctctccctacaggctctctcccagggac
atgagcaaggcctctcctcagcccaatgaccccaacgcctcccgctacagcgtgcctcca
gtgctccacccagctcccaaccaggtggtccagagcctgcccgatggagtccgtgtgact
ttctccagacacagccgacccgccaacattccatctccacctccactcattccaacctcc
aaacccacagacaagccttcctttatccagggaggctccatctcccagggtactcctggt
acgtacctgccatcccatgctgtctacggtggcccagagggtgcaaagagctcagtgggc
tccatatccctgggcctgcccaggcagcaggaccccaccaagcctgtgtcctacattaag
caggaggagtgttctccacgtgggcagtctgagggcctcctctcccagatgcagtatgag
ggggtagtcagaggaggcccaatggatgggggtatcagcagaggcaacccagccagagga
tcaatcacacagggcacgccagccctgtctgggtccagcattgcggctgacctgctgaag
ggcaccatcaccaagctggccacagaggacctgagcagcccagagaaggaccgggaacag
ctggccaagggacacgtcatctacgagggcaagagtggacacatcctttcctatgacgcc
attaagaacccaagagaggccacgtgtagccccaggccaggccatgagctcaaacgctcc
cacgatatgatggagtccgccagaggccacaccgggagagaaggagcccccttcgagggg
ttgataatccgagccctgcccagagaaagtccccatggggagtctaaggagaggccaatg
atgactggatccatcatgcaaggtacacccagaacctctgcagaggcctatgaggagagc
atgaagtacggcaagcagataaagagggagagcccacccatccgctcatttgaggggggg
ataggtaaaggtaagccctatgagggggtgaacaccattaaggagatgggccgctccatc
cacgagatcccccgtcaggaccagcctggacaggacccccgcaagacccccgacatggct
gccaacaaccgagccgccatggagggctccatatcccagggccatcctctgagccagtcg
gccatcaagcacaacgtcaagtccctgatcaccagtcccattaggctgccccagggcccc
accatgccccagttggaggcaatggagcgggccaagtacgaggagagcaaggcggcggcg
gagcagcagcagcgggcgcgccacacttctgtggtcaactcagccacctccgtcctgcgt
tccacgcaccaggagcaaggcaagtcccagctcagcccgggcatgtaccaagacacagat
gcccgcaggaccccggtcaactacagctccagctccatgtctagaggctcgcccatgctg
ggccgaggacaggagggctctgggaagcctgcgtcccacgacaggaagagtgccatgacc
cccaatcagagggacagtgttccagccaagtcccctgtgtcagggggtgaccccaaccac
cctatggcctcccacagccccttcgacccccaccaccgccccatggcccctggagagccc
cgcttccacctgcctccacacctagaccctgccctcttccaccgggccgtcctggaccca
gctgcgtacatgttcccgaggcagccgtccccgacgggctaccacaacacctaccagctg
tacaccatggagaacacgagacagaccatcctcaacgattatatcacctcccagcagatg
caggttatcccacggcccgacgttcctaggggcctgtcgccacgggaacagcaacagatt
gccatctcttatcctcccggagcacgagggattattgatctagcccagatgcctccaact
atcctgttgcctcaccctgggggaacaggtcctcccactatggaccgcatcacctacatc
cccggagctcaaccccctttccctcctaggcctttcaacccagcctccatatctccagtc
tgtttctttgtgtccacaggccaccaagcccacctcgcagctacagcagcggcctgtcag
gagcgagaacgagagagggagcgcgaaagagaaagggagcgcgatcgggagcatcgagag
aaagagagggaaaaggagcgagaaagggagcacagggagagggagagagagagggaacag
gagcacagacaacgagagcgtgagcgagtggtggctgcagcggttgccaatgactacatg
cgtggaggtccagggcagccagatagaccaggtagccgtggttacctgcgtagcccctcc
ccctctatgaggtcacaggaagcccagcagcagcggcccagcatcttccaaggagccaac
agcaagggcgtcatcacccctctcatgccgtcagcagcagcagcccaggcaggatctcgt
tacagcactgcagccgacgccctggctgccctggtggacgctgccgcctccgcccctcag
atggacgtcaacaagggcaaggactcctccaagcacgatcaagacgacgatatgtcttca
tcatcatcatcccctgtggcggtgaccaggcggcagcacgagcagcagcaggaggcagac
aggcgctccatgcagtctccctacatgtctctgccaggggggaaaccccacccaggatac
gctgagggtcccggtggtccccaggggagcaaggacaagggtccccccaccaagtcacgc
atcgaggaggagctgaggaccagaggaaagaccaccatcacggccgccaacttcatcgac
gtcatcatcaagcgtcagatcgcctcggacaaggactcacgggagagaggctcccagagc
tccgattcctccagcagcttgtcatccagtcggtatgaggtccccagtggaggagccatc
gaggtgattagcccagccaactctccagcccaggcccagcaggagaagcagcagcaggac
gacagggagagggccgacagggacagggccgcacaggcagcatcacaagcagctggcatg
cgtcccttcgacatgagccgctaccgacagtcagcggagtcacagcagcccccctcctcc
caggctgacggcgggtactcccagtcccagcaggtccccaagacccaccgggtcatgacc
ctggctgaccacatctcgcatatcatcacccaggactttgccaggaaccaggaccctcct
cagtcctccaccacattccagagcgcccagctgccagtatctagctcgggccgtgccaag
ggccacagccgctacagcccagagaaccagacccaagccccatcacaccaccagagaccc
acacccagcagagtgtctccggagaacgcccctgacaagcccagagccagacctggtaaa
tcccctgatcggggtggcaggggggcggtggagagctatgagcccatctcccctccccag
agctatcaggataaacaacaggagaccagagagcagcagcagcaacaaccccagagacga
gaggctgaccagcctgagatgaggggtgactctcgctcccctggcagtgtcagctacctg
ccctccttcttcaccaagctggagaacacctcccctatggtgaaatccaagaagcaggag
atatttcgcaagttaaactcctctggtgtcggggattctgatgttggaaatgcacaacca
ggcacagagatcttcaatttgcccgctgtgaccagctcaagcagcgtgaaccccaggaac
cactccttcagcgacccggccagtaacctgggcctggaggacataatccggaaggccctg
atgggcaacctggaagaaaggccagaggagcaccagggagggcctcagcccagctctaac
acccccagcaatgaggcccgccaggaggccaacccctcacctagcatgggcaagcagaaa
ctgcagagcaaagccaacagccggaagtccaagtcgcccaacccaggccaggcatatgca
gcaggaggggagcggccctcgtcagtgtcctccgtccactcagagggagactaccaccga
caggccccgggctgggcctgggaggaccggccctcgtccacaggctctatgcagttcccc
tataaccccctgaccatgcgcatgctgagcagcacaccccccacctccatggcctccccc
tccatgcaggcccagcagcccccaccaggaggccctccggggtgccagcagcagcagcgt
gtgtgggagcgggagcccctactgtcggagcagtatgagaccttgtcagacagcgacgac
tga
DBGET
integrated database retrieval system
