Coregonus clupeaformis (lake whitefish): 121574665
Help
Entry
121574665 CDS
T08357
Symbol
chd6
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 6 isoform X1
KO
K14436
chromodomain-helicase-DNA-binding protein 6 [EC:5.6.2.-]
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
cclu03036
]
121574665 (chd6)
Chromosome and associated proteins [BR:
cclu03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
121574665 (chd6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_CHD6-9
Helicase_C
Chromo
BRK
ResIII
DEAD
HDA2-3
HTH_CHD1_Hrp3
Chromo_MIT1
MUN
Motif
Other DBs
NCBI-GeneID:
121574665
NCBI-ProteinID:
XP_045079031
LinkDB
All DBs
Position
10:complement(59541232..59642787)
Genome browser
AA seq
3121 aa
AA seq
DB search
MAFCVLGNKCGSKTQCSATDALTGECCPDAAKVKRNMKIQNKDKQMSTIHLLKHTPATAS
STATDQNAQTPFSSGPLDSKDQIRVLGGGQTNHCMAHAKHPRMGEAGTSSGSLSPCAPSS
PLNSEEDDGGGGRRAKKKKKRKKKDKRGEPGAAWQHKGSEKDTKPKKTREQKEGKELLPR
KSKAPKKLKEVKVKEVKSPKETPKEVKRGRKPKVQVQAPPLPKPPVECKSAPSPPRQRGR
KPREQVLQGPVPVEKKKKGKRKSVAVLQEAGESDDAASLSALVVGGEESIDSLDNTKRRS
GRQVKRRKYNEDLDFKVVDDDGETIAVLGTGRIPALNAATLAWQAEEPPEDEANIIEKIL
SVRTVKKEASPEETPEESEEFYVKYRNFSYLHCKWATLEDLEKDPRIHQKIKRFRTKQAQ
MKHIFVEPDEDLFNPDYIEVDRVLEVAITTDTETGEEVTHYLVKWCSLSYEEATWELQED
VDPGKIREFEEIKRIPGYKFVERPQSDKWQKLDKSKDYRNGNQLREYQLEGMNWLLFNWY
NRKNCILADEMGLGKTIQSITFLFEMFSLGLRGPFLIIAPLSTITNWEREFRNWTEINVI
VYHGSQISRQMIHQYEMYHKDQQGNIVSGGYKFHGVITTFEMIMADCPELKKIHWRCVVI
DEAHRLKNRNCKLLEGLKLMNLEHKVLLTGTPLQNSVEELFSLLNFLEPLQFPSESLFLE
EFGDLKTEEQVKKLQAILKPMMLRRLKDDVEKNLAPKEETIIEVELTNMQKKYYRAILEK
NFTFLAKGANQHNMPNLINTMMELRKCCNHPYLIKGAEEKILDSFRKTHSPDAWDFNLQA
MIQAAGKLVLIDKLLPKLIAGGHKVLVFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNL
RQAAIDRFCKVDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIG
QSKAVKVYRLITRNSYEREMFDKASLKLGLDKAVLQDINRKGSLNGIQQMTKIEVEDLLR
KGAYGALMDEEDEGSKFCEEDIDQILQRRTQTITIETEGKGSTFAKASFVSSGNRTDISL
DDPNFWQKWAKIAELEIDSKAEKESLVIDTPRVRKQTRHYNSFEDDELMEFSELDSDSEE
RPCRTRRLSERSRHYLRAECFRVEKNLLIFGWGRWNDILTHGRFKWQLAECDIEVLCRSL
LVYCLRHYKGDDKIKSFIWDLITPAKDGHKQDLQNHSAGLSAPVPRGRKGKKLKNQLSVP
EMKHADWLVNCNPEVVLHDDSYKKHLKQHCNKVLLRVRMLYYLKAEVLGEAAAQSLEGIP
ASKLEVALPDIDYIEIPAGWWDAEADKSLLIGVHKHGYERYNAMRADPELCFLELVGMPD
VTALSAEQSGGEVVADLTDSNCKSDDMKDDPESKQEEGGMERVDNKDETGSSNDAMDKHD
SVVQDTLSVEMAQEGFGQEGFGQEGMELKGRPLWPAGPNLTARLRRLITAYQRFMRREPL
RHDFLLPGAGPGPMSWQLGEELRRCTAAAAKPDPLFLEWQRRWVMMSEQRWTRREQADFY
RTVSSFGVVYDPEKKTFDWSQFRSFARLERKTDESLERYFSSFVSMCRTACRLPPRKDEG
PLDHNLFVEPITEERAARTLYRIELLRKVREQVLRHPLLGPRLQLCRPSLYLPVWWECGK
HDRDLLIGAARHGLSRTDYYILNDPQLSFLEAHRNYVQKENHQGYHPGVHHAGMAPSPHL
HPCCLYETGLGQCHSPQPPEYHHPATPSSSSIHAHSHPHIHVHGHPPEIVGKDSGGSLGM
VSGPREGFLDCPPLDESLELASLQQEGLASDSLHGKSAKEAFNGFPFNSAQGGQSMLNSY
GVQGELNGEQSADMDPIISSKLRSDVLVGEQGSSEETGLMAPLLELDQELQAPWESTDHT
GAADMFNEADPILGAPALETEFLDTEEQRGDGGREDRAGGVLDDCLGIPSSRSDPGEPLP
SCFMLFKDIGVSEEEPAEKHTDLSTSCPPPYVPPPPLSLSHMTLHPHHHQGDAEELEEKL
SDSDAVTHMPCPKEREAENDVAFEFDKEMSVDSLCLVGPEQGLEASGIPCEDSPQEEPFE
GACEGTGMGSPVESLEAALEGPGEETLERDMALGPEEEGLLEGQFEEPLEMSPMDPQEEE
PVEGPLEDSCKDPAPEGPFAGPLEEQYDVEPEGASEGPAEAESTFSEHTLPTVDATDSLP
PSPSFPTSQPKPPLSPRVAGVAQIKLEFPLDPESAESKSDILEPDSTVLTPKLEQTEVLL
EVKDEIEERPQTPASVVDSYVEVARFAAPMSMCEMPDSLQDTREPTIAQLLQEKALYSFS
EWPKDRVIINRLDSICHAILKGKWPSSSQQYDSPSSLANTCVSNSVHQRAGFISARVQPS
QSLNFNIPAPPVTRLPKYKQRGAGECSPGGWRLTSLPLLQERLVAPPYLPELKRGRRSFE
YEGVVLSKQCHTGEKMPVTVPHRGGALLLNGWQEAAMDLSKAGDLGIGGEVAATVGHMSH
QVHPSSHKLPAMGAMQSVIQSAMQGSVGMDMAGILQAGLIHPVTGQIVNGNLRRDDAIMR
RRRGRRRNVEAVDMGFVKSRGMHVPEQQGRVEVISHSAVSSTSSPPERPPGPSTPTQPEV
VAIDREAANKGLMEWLRQNPNYNMEVPTFAPSPGAAMLHSFVERPKQRRHRCKDPTKLDV
NSLTGEERVPVVHRSTGRRLGGAMAPAIKELSRWLDANTEYCVAPDWADVVKHSGFLPEG
KFTRILTEPVCRDQGPRRRGRRPRSEMPKPLLSESPMGPLFMNGSLIGSMDLVSLQNLRN
VQGIPLTGLMGFPHGFAVSAGEDSKNGLSMLPMMLHGIHGSPHMFSVQGLMGQPPTSSAP
TSSSSSSAAAVTTTAASSPSRGPSQSSSSTQADGSGIQSGGERKREDKQSTEDKQQGAMG
SHSIAAITTTAAASSSSCVSSSSGSHLAFNPFLVPGMSHGLLYPHMFLPHGGIMALPGMP
PTESSGSPKRKKKRTREEGVMVVEAGSHSHLQTNSGPPKTPSNGQTGESTVDQAGQEARQ
QMEDKVQEEGTGHDSHAPPEVNPEKCVEEESETEENRVMEKEKLPGEEEEERESRGAQDS
Q
NT seq
9366 nt
NT seq
+upstream
nt +downstream
nt
atggcgttttgtgtccttggaaataaatgcgggagtaaaacccagtgttcggcaactgat
gccctgaccggtgagtgttgcccagatgcagcaaaggtgaagagaaacatgaagatacaa
aataaggacaaacagatgtccacaatccacttactgaagcacactccagctacagcatcc
tctactgccactgaccaaaatgcacaaactccattttccagcggacccctagactccaag
gaccagatcagggtcctaggcggcgggcagaccaatcactgcatggcccacgccaagcac
cccaggatgggcgaggcgggcaccagctcaggcagcctcagcccctgcgccccctcgtca
cccctcaatagcgaggaggacgacggagggggcgggcggcgggcaaagaagaagaagaaa
cgaaagaaaaaagacaagaggggcgagcctggcgccgcctggcagcacaagggctcagag
aaggacaccaaaccaaagaaaacgagggagcagaaagaagggaaggagctgctgccacgc
aagtccaaggcgcccaagaagttgaaggaggtcaaggtgaaggaggtgaagtcaccgaaa
gagacaccaaaagaggtgaagagagggaggaaacccaaggtccaggtgcaggccccgccc
ctgcccaagccccctgtagaatgcaagagtgcaccatctcctcccaggcagaggggccgc
aaacccagagagcaagtcctccaagggccggtaccagtggagaagaagaaaaagggcaag
aggaaaagcgtggctgtcctccaggaggctggagagagcgatgacgcggcctccctgtcc
gcgctggtcgtggggggagaggagagcatcgactcccttgacaacacgaagcggcgctcg
gggcgacaggtgaagcgcagaaagtacaacgaggacctggacttcaaggtggtagatgac
gatggggagaccatcgccgtgctggggacgggccgtatccctgccctcaacgctgccact
ctcgcctggcaggctgaggagccccctgaagatgaggcaaacatcattgagaaaatcctg
tcggttcgaactgtgaagaaagaggcatcccctgaggagacaccggaggagtcggaggag
ttctatgtcaagtacagaaatttctcctacctgcattgtaaatgggcgactttagaggat
ttggagaaggatcctcgcatacaccaaaaaatcaagcgcttcaggactaagcaggcccaa
atgaagcacatatttgttgagcctgatgaagacctctttaaccctgactacatagaggtg
gaccgagttctggaggtggccatcactacagacacagagacaggagaggaggtgacacac
tacctagtgaagtggtgctccctgtcctatgaggaggctacatgggagcttcaggaagac
gtggacccggggaagattcgggagttcgaggagatcaagagaatccctggatacaaattt
gtggagagacctcagtcagacaagtggcagaagctggacaagtccaaagactaccgaaat
gggaatcagctgagagagtaccagctggaaggcatgaactggctgctcttcaactggtac
aacaggaagaactgcatcctggctgacgagatgggcctggggaaaacaatccagtccatc
accttcctcttcgagatgttctccctgggcctgcgggggcccttcctcatcatcgccccc
ctctccaccatcaccaattgggagagggagttccgcaactggacggagatcaatgtcatc
gtctaccatggcagccagatcagccgccagatgatccatcagtacgagatgtaccacaag
gaccagcagggaaacatagtgtcgggcgggtacaagttccacggggtgatcaccaccttt
gagatgatcatggccgactgtccagagctgaagaagatccactggcgctgcgtggtcatc
gacgaagcccaccgcctcaagaaccgcaactgtaaactcctggagggcctcaagctcatg
aacctggaacacaaggtcctcctgacgggcacccccctgcagaactcggtggaggagctc
ttcagtcttctcaacttcctggagcccctacagttcccctcagagagcctcttcctagag
gagtttggagatctgaagactgaggaacaggtgaagaagctgcaggccatcctgaagccc
atgatgctgcggcggctgaaggacgacgtggagaagaacctggcgcccaaggaggagacc
atcatcgaggtggagctcaccaacatgcagaagaagtactaccgcgccatcctggagaag
aacttcaccttcctggccaagggggccaaccagcataacatgcccaacctcatcaacacc
atgatggagctgcgcaagtgctgcaaccacccctacctgatcaaaggtgcggaggagaag
atcctggatagcttcaggaaaacacacagccctgatgcctgggacttcaacctccaggcc
atgatccaggcggcggggaagctggtgctcatcgacaagctgctgcctaagctgatcgct
ggcggccacaaggtgctggtcttctcccagatggtgcgctgcctggatatcctggaggac
tacctcatccagaggaggtacacctatgagcgcatcgacggcagagtgcgggggaacctg
cgccaggcggcaattgacaggttctgtaaggtggactcagaccgctttgtgttcctgctg
tgtacccgtgctgggggcctgggcatcaacctgaccgctgcagacacctgcatcatcttc
gactcggactggaacccccagaacgacctacaggcccaagctcgctgccaccgcatcggc
cagagtaaagcagtgaaggtgtatagactgatcaccaggaactcatatgagagggagatg
tttgacaaagccagtctgaagctgggtctagacaaggccgtgctgcaggacatcaatcga
aagggcagcctcaatgggatacagcagatgaccaagattgaagtggaggacctgctgagg
aagggcgcatatggagcgctgatggacgaggaggacgagggctccaagttctgcgaggag
gacatcgaccagatcctgcagcgccgcacccaaaccatcaccatcgagacagagggcaag
ggctccaccttcgccaaggccagctttgtgtcttctggaaacagaactgatatttccctg
gacgatcccaacttctggcagaaatgggccaaaatagcagagctggagattgactccaaa
gcagagaaggagagcctggtgattgacacgcctcgtgtgaggaagcagacgcgtcactac
aactcgtttgaggatgacgagctgatggagttctccgagctggacagcgactcagaagag
aggccctgtcgcacccgccgcctcagcgagaggagcaggcactacctccgtgcagagtgc
ttccgtgtagagaagaacctgctcatattcggctggggtcgctggaacgacatcctgacc
catgggcgcttcaagtggcaactggccgaatgcgacattgaggtgctgtgccggtcgctg
ctggtctactgcttgcgccactacaagggcgacgacaagatcaagagctttatctgggac
ctcatcacacccgccaaggatggccataaacaggacctgcagaaccactctgcaggcctg
tcggccccagtccccaggggacgcaagggtaagaagctaaagaaccagctgagtgtgccc
gagatgaagcatgcagactggctggtcaactgcaacccagaggtggtgctgcatgatgac
agctacaagaaacacctcaagcagcactgcaacaaggtacttctgagggtgaggatgctg
tactacctgaaggcggaggtcctgggagaggctgctgcccagtccctggagggcattcct
gccagtaaactggaggtggcactgcctgacatcgactacatcgagatcccagcaggctgg
tgggatgcagaggcagataagtctctcctcataggagtgcacaaacacgggtacgagcgg
tacaacgccatgcgggccgacccagagctgtgcttcttggagctggtgggcatgcctgac
gtcacggcgctctcagccgagcagagtggaggagaggtggtggctgacctcactgacagt
aattgcaaaagtgatgacatgaaagacgatcctgaaagcaagcaagaggagggaggaatg
gaaagggttgataataaggatgaaaccggctccagcaatgatgcaatggacaagcatgac
agtgttgttcaagacacactctcagtggagatggcccaggagggctttggccaggaaggg
tttggccaggagggcatggagctgaagggtcgccctctgtggcccgccggccctaacctt
accgccaggctgcgtcgcctcatcacagcttaccagcgcttcatgcggcgcgagcccttg
cgtcatgacttcttactgccaggggcgggcccggggccgatgtcctggcaactgggggag
gagcttaggcgctgcacggcagccgctgccaaacctgaccctctcttcctggagtggcag
agaaggtgggtgatgatgtcagagcaaaggtggacacggcgtgagcaagcagatttctac
cgcacagtgtcgtcgttcggcgtggtgtacgacccagagaagaaaacctttgactggagt
cagttccgatccttcgcccggctggagaggaaaacggacgagagcctggagagatacttc
agcagctttgtgtccatgtgccgcaccgcctgcagattgccccccaggaaggacgaaggg
cctctggaccacaatctgtttgtggagcccatcacggaggagcgagcagcacgcaccctc
taccgcatcgagctgctgcgcaaggtcagggagcaggtgctgcgccacccgctgctgggt
ccacggctgcaactgtgtcggcccagcctttacctgcccgtgtggtgggagtgtggcaaa
cacgaccgcgacctcctgattggggcagcccgccacggcctcagccgcaccgactactac
atcctcaacgacccgcaactctccttcctggaggcccaccgcaactacgtccagaaggag
aatcaccagggctaccatcctggggtgcaccacgcaggtatggccccctcaccccacctc
cacccctgctgcctgtacgagacaggcctcggccaatgccactctccccagccgccggag
taccaccacccagccaccccctcctcctcgtcgatccatgcacattctcacccgcacatc
cacgtccatggtcacccgccagagatagtgggcaaggattccgggggcagcctaggtatg
gtgtctgggcccagggagggcttcctggactgcccccctctggacgagtccttggagctg
gcctcactgcagcaagagggcctggcctcagattccctccatggcaagtctgccaaggag
gccttcaacgggttccccttcaactctgcgcagggcggccagagcatgctcaactcgtat
ggtgtgcagggggagctgaacggcgagcagtcagccgacatggaccctatcatctcgagc
aagctgcgcagcgacgtgctggtgggtgagcagggctcctctgaggagacgggcctgatg
gcgcccttgctggagctggaccaggagctgcaggcgccctgggagagcacggaccacacc
ggcgccgcggacatgttcaacgaggctgaccccatcctgggggcgcccgcccttgagact
gagttcctggacaccgaagagcagcggggagatgggggaagggaagacagagcaggggga
gtgcttgatgactgcctgggtatcccctcctcccgtagtgacccaggggagccgctgccc
tcttgttttatgctgttcaaggacattggcgtgagcgaggaggagcctgctgagaagcac
accgacctctccaccagctgccctccaccctacgtcccccctccgcccctgtcgctgtcc
catatgaccttgcacccccaccaccaccagggtgatgccgaggagctagaggagaagctg
agcgattcggacgccgtcacccacatgccctgccccaaggagagagaggctgagaatgat
gtggcctttgagtttgacaaagagatgtctgtggacagtctgtgtctggtggggccggag
cagggcctggaagcctcaggtataccatgcgaggactctccccaagaggagcccttcgag
ggggcctgcgaggggacggggatgggctctccagtggagtcacttgaggcggctctagag
gggccaggggaagagactttagaaagggacatggccttggggccagaggaggaggggctt
ctagaggggcagtttgaagaacccttggagatgtcaccaatggatccccaggaggaggaa
ccagtggaggggcctctggaagactcttgtaaagacccagcaccagaaggaccgttcgca
gggccattggaggagcagtacgacgtagaaccagaaggggcctctgaggggcctgccgaa
gcagagagcactttcagcgaacacacactccccactgttgacgcaacagactctctgccc
ccatccccctcattccccacgtcccagcctaagccaccactgtccccacgcgtggcggga
gtggcacagatcaaactggagttccctctggacccagagagcgctgagagcaagtcggac
atcctggagcccgacagcactgtcctcacacccaaactggagcagacagaggtgctgctg
gaggtgaaggacgagatcgaggagaggccccaaaccccagcctccgtggtggacagctat
gtagaggtggcacggtttgcagcccccatgtccatgtgtgagatgcctgacagtctgcag
gacacgcgagagcccaccatcgcccagctgctgcaggagaaagccctctactccttctcc
gagtggccaaaggaccgggtgatcatcaaccgcctggacagtatctgtcacgccatcttg
aaggggaagtggccctcttccagccagcagtatgactctcccagctctctggcaaacacc
tgtgtgtccaacagtgtgcaccagagggctggcttcatctcagccagggtacagccttcc
cagagccttaacttcaacatcccagccccgcctgtcacccgcctgcccaagtacaagcaa
agaggtgccggggaatgcagcccgggaggctggaggttgacatccttgcctctcttgcag
gagaggctggtggcgccgccctatctgcccgaactaaagaggggtaggcggtcgtttgag
tacgagggcgtggtgctcagtaagcagtgccacacaggggagaagatgcccgtaacggtg
ccgcacagaggcggggcgctgctgctcaacggctggcaggaggcggccatggacctctcc
aaggccggggatctgggcattgggggcgaagtggcagccactgtgggccacatgagccac
caggtccaccccagttcccacaaactgcctgccatgggcgccatgcagagtgtcattcag
agtgccatgcagggctcggtgggaatggacatggccgggatcctgcaggcaggtctcatc
caccccgtcaccggccaaatcgtcaacggcaacctgaggcgcgacgacgccatcatgcgc
cgaaggagaggcagacggagaaacgtggaggcagtcgacatggggttcgtcaagagcaga
ggaatgcacgtgccggaacaacagggcagggtagaagtcatcagccattctgcagtgtcg
tccacctcctccccaccggaacgccccccgggaccctccacccccacccagccagaggtg
gtggccatcgacagagaggctgccaacaagggcctgatggaatggctgcggcagaatccc
aactacaacatggaagtgcccactttcgcaccgtctcctggcgcagcgatgttgcacagc
tttgtggagcggcccaaacagcggagacatcgctgcaaagaccccaccaaactggacgtc
aactccctaacaggggaggagagggtgcccgtggttcacaggagcactggccgcaggctt
gggggtgctatggctccagcaatcaaggagctctcccgatggctggacgcaaatactgag
tactgcgtggcacccgactgggcagatgtcgtgaaacactctggctttcttcccgagggt
aagttcacccgcatactcaccgagcctgtgtgccgcgaccaggggccccgccgccggggc
cgtcgtccccgcagcgagatgcccaagcccctcctctctgagtcacccatgggcccactc
ttcatgaacggcagcctgatcggcagcatggacttggtcagcctccagaacctccgcaat
gtccagggcatcccgctcacgggcctgatgggattcccccatggcttcgccgtgtcagcc
ggtgaagactccaagaacggcctgagcatgcttcccatgatgctccacggcatacacggc
tccccccacatgttcagcgttcaggggctgatggggcagccacccaccagctccgctccc
acctcctcctcttcctcctcagcggctgccgttaccaccaccgcggccagtagcccctcc
cgaggccccagccagtcgtcatcgagcacacaggcagatggctccggcattcagtctggc
ggagaaagaaagagggaggacaagcagtcgacagaggataagcagcaaggtgcgatgggc
agccacagcatcgcagccatcaccaccactgcggcagccagcagcagcagttgcgtcagc
agtagcagcggcagccacctggccttcaaccctttccttgttccggggatgtcccatgga
ctgctgtaccctcacatgttcctcccgcacgggggcatcatggcgctgccaggtatgccg
cccacagagtcctccggcagccctaagaggaagaagaaaagaacaagggaggaaggggtg
atggtggtggaggcaggcagccacagccacttacagacgaacagtgggcctccgaaaaca
cccagcaatggtcagactggggagagcacggttgaccaggccgggcaggaggctaggcag
cagatggaggacaaggttcaggaggagggcacgggacatgactcccatgctcctccagag
gtaaacccagagaagtgcgttgaagaggagagcgaaacggaggagaatagagtgatggag
aaggaaaaactgcctggagaggaggaggaggagagagagtcaaggggggcacaggattca
caatag
DBGET
integrated database retrieval system
