Coregonus clupeaformis (lake whitefish): 121574672
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Entry
121574672 CDS
T08357
Name
(RefSeq) RNA-binding protein 39-like isoform X1
KO
K13091
RNA-binding protein 23/39
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cclu03041
]
121574672
Spliceosome [BR:
cclu03041
]
Common components
Common spliceosomal components
General mRNP proteins
121574672
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Gene cluster
GFIT
Motif
Pfam:
RRM_1
RBM39linker
RRM_occluded
PRP38_assoc
CDC45
RBD_DEAH11
RRM_7
RSRP
Presenilin
Motif
Other DBs
NCBI-GeneID:
121574672
NCBI-ProteinID:
XP_045079072
LinkDB
All DBs
Position
10:61628503..61654188
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AA seq
560 aa
AA seq
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MSAGNKTQQQFFSRTRIHFSQHIKCSIIMADDFDIEAMLEAPYRKDEIKHSSPNGHEERS
KKKKKSRSRSKDRKRSKSRDRKKSHDHKRSRSRERKRSRSKERRRSRTRSRERSGRYRDH
KTTFSGPKFNGGSRGKIGPPPVIKLSRRRSRSRSPFKKEKSPVRQPIDNLTPEERDARTV
FCMQLAARIRPRDLEEFFSAVGKVRDVRMISDRNSRRSKGIAYIEFVEANSVPLAIGLSG
QRLLGVPIIVQASQVMAEKNRAAAMANNLQKGNAGPMRLYVGSLHFNITEEMLRGIFEPF
GRIESIQLMMDSETGRSKGYGFITFSDAECAKKALEQLNGFELAGRPMKVGHVTERTDAS
SASSFLDSDELERTGIDLGTTGRLQLMARLAEGTGLQIPPAAQQALQMSGAIAIGAMAAV
SAAMNPAMNMNMNMNNMNMNTAMNLPSQPLATHCFQLSNMFNPQSEDDPGWDVDIQHDVI
EECNKHGGVVHIYVDKNSTEGNVYVKCPTIPAAMAAVNALHGRYFAGKMITAAYVPLPTY
HNLFPDSVTATQLLIPPARR
NT seq
1683 nt
NT seq
+upstream
nt +downstream
nt
atgagcgcggggaacaagacgcagcaacagtttttttcccgaactcgcatacatttttct
caacacatcaagtgctccatcatcatggctgatgactttgacatagaagcaatgcttgag
gctccatatagaaaggatgagatcaagcacagtagtcccaatggccacgaggaacgcagc
aagaagaaaaagaagagcaggagccgaagcaaagaccggaagcgaagcaagagccgtgat
cgcaagaagagccatgaccacaagaggagccgcagccgcgagcgaaagcggagccgcagc
aaggagaggcgccggagccgcactcggagcagagagcgcagcggccgatacagggaccac
aagaccaccttctctgggccgaaatttaacggtggttccagagggaagattggccctcca
cctgtcatcaagctaagccgaaggcgttccagaagccgaagccctttcaagaaagagaag
agtcctgtgaggcagccaatagacaatctgactccagaggaaagggatgctcgcactgtg
ttctgcatgcagctggcagccagaatccgaccacgagacctggaggagttcttctctgca
gtgggaaaagtgagagatgtgcgcatgatctctgacagaaattcgaggaggtcgaagggg
atagcttacattgagtttgtggaggccaactctgtgccactggctataggattgtctggc
cagcgacttctgggagtgccaatcattgttcaggcctcgcaggtaatggctgaaaaaaac
agggctgctgccatggccaacaacctgcagaagggcaacgctggcccgatgaggctctac
gtcggatccttacactttaacatcacagaggagatgctgagaggaatctttgagcctttt
ggaaggattgagagtattcagctcatgatggacagtgagactgggagatctaaaggatat
ggcttcatcactttctcagacgcagagtgtgccaagaaggccctggagcagttgaacggc
tttgagctggccggccggcccatgaaggtgggccatgtgacggagcgcacagatgcctcc
agcgccagttcattcctggacagcgacgagctggagaggacgggcatcgacctgggcacc
accgggcgcctgcagctcatggcccggctggctgaaggcacgggactgcaaattccccca
gccgcacagcaagccctgcagatgagtggggccattgctattggtgccatggccgctgta
tcagctgccatgaatcctgctatgaacatgaacatgaatatgaacaatatgaacatgaat
acagctatgaacctgccatcccagccacttgctacacactgtttccagctgtctaacatg
ttcaaccctcagtctgaagatgacccaggctgggatgttgacattcagcatgatgtcatt
gaggaatgcaacaaacatggaggagttgtgcacatatacgtcgataagaattccactgaa
ggcaacgtgtatgtgaaatgtccaaccattcctgctgccatggctgcagtaaacgcatta
catggtcgatattttgcaggtaaaatgatcacagcggcatacgtccctctcccgacatat
cacaaccttttccctgactctgtgacggctacccagctcctaatccctcccgctcgccgg
tga
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