Coregonus clupeaformis (lake whitefish): 121574808
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Entry
121574808 CDS
T08357
Symbol
col2a1b
Name
(RefSeq) collagen, type II, alpha 1b isoform X1
KO
K19719
collagen type II alpha
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04510
Focal adhesion
cclu04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
121574808 (col2a1b)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
121574808 (col2a1b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
cclu00536
]
121574808 (col2a1b)
Glycosaminoglycan binding proteins [BR:
cclu00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
121574808 (col2a1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
Frataxin_Cyay
Motif
Other DBs
NCBI-GeneID:
121574808
NCBI-ProteinID:
XP_041743333
LinkDB
All DBs
Position
10:complement(6856038..6928197)
Genome browser
AA seq
1490 aa
AA seq
DB search
MFSFVDSRTVLLLVATQVILLAVVKCQEEDQDLGSCMQDGQRYSDKDVWKPEPCRICVCD
TGTVLCDEIICEEIKDCPKPEIPFGECCPICVRDGEAPSSGAPGAKGQKGEPGDITDVVG
PRGPGGPMGPPGEQGPRGDRGDKGDKGSPGPRGRDGEPGTPGNPGPPGPPGPNGPPGLGG
NFAAQMAGGFDEKAGGAQMGVMQGPMGPMGPRGPPGPSGAPGPQGFQGNPGEAGEPGSAG
PLGPRGPPGPSGKPGDDGEAGKPGKGGERGPSGPQGARGFPGTPGLPGIKGHRGYPGLDG
LKGEGGAAGSKGESGAPGENGAPGPMGPRGLPGERGRPGPSGAAGARGNDGLSGPAGPPG
PVGPAGAPGFPGSPGSKGEAGPTGARGPEGAQGPRGESGTPGSPGPAGASGNPGTDGIGG
AKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGTSGEPGIPGFKGEAGPKGELGPAG
PQGALGPAGEEGKRGPRGEPGAAGPLGPPGERGAPGNRGFPGQDGLAGPKGAPGERGVGG
VSGPKGAGGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPGGAAGEDGRPGPPGPMGARG
QPGVMGFPGPKGANGEPGKGGEKGLLGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQG
QPGPSGFQGLPGPPGPPGEGGKPGDMGVPGEGGAAGITGPRGERGFPGERGGAGPQGLQG
PRGLPGTPGTDGPKGAIGPGGASGAQGPPGLQGMPGERGASGIPGPKGDRGDNGEKGPEG
ASGKDGSRGLTGPIGPPGPAGPNGEKGESGPSGPSGAAGARGAPGDRGETGPPGPAGFAG
PPGSDGQPGAKGEQGEGGQKGDAGAPGPQGPSGAPGPSGPTGVSGPKGARGAQGPPGATG
FPGAAGRVGPPGPNGNPGAAGPAGPSGKDGPKGVRGDGGPPGRQGDAGLRGAAGAPGEKG
DAGEDGPPGPDGPSGPSGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGGGGDRG
APGPVGPPGLTGPAGEPGREGNAGSDGPPGRDGATGIKGDRGNTGPAGAPGSPGGNGAPG
PVGPTGKQGDRGEAGAQGPAGPAGPAGARGMAGPQGPRGDKGEAGEGGERGQKGHRGFTG
LQGLPGPPGQAGDQGASGPAGPSGSRGPPGPVGPSGKDGSNGMPGPIGPPGPRGRSGETG
PSGPPGNSGPPGPPGPPGPGIDMSAFAGLSQPEKSPDPLRYMRADQASGNLRTHDAEVDA
TLKSLNNQIENIRSPEGSKKNPARTCRDLKLCHPDWKSGEYWIDPNQGCTIDAIKVYCNM
ESGESCVYPKPASIPKKNWWSSKSKSAKHIWFGETMNGGFHFSYGDDSLAANTASIQMTF
LRLLSTEASQNLTYHCKNSVAYMDGATGNLKKAVLLQGSNDVEIRAEGNSRFTYSVMEDG
CTKHTGAWSKTVIEYRSQKTSRLPIVDIAPVDIGGADQEFGVDVGAVCFL
NT seq
4473 nt
NT seq
+upstream
nt +downstream
nt
atgttcagctttgtggattcgaggactgtactgctacttgtagcaacccaagtcattcta
ttagccgttgtcaaatgtcaggaggaagaccaggacctaggcagctgtatgcaggacgga
cagcgctatagtgacaaggacgtatggaaaccagagccgtgtcgtatttgtgtgtgcgac
acgggaactgtcctgtgtgatgaaataatctgcgaggagattaaagactgccccaaaccc
gagatcccattcggagagtgttgccccatctgcgtgcgggacggggaagctccctctagt
ggggcaccaggagctaagggacagaagggtgaaccaggagatatcacagatgtcgtagga
ccaagaggacctggaggccccatgggccccccaggagagcagggaccacgcggagacaga
ggagacaaaggcgacaagggcagccctgggccccgtggcagagatggcgagcctggtacc
cccggtaaccccggcccccccggacccccaggacctaacggaccccccggccttggaggt
aactttgctgcgcagatggcgggaggattcgacgagaaggctggtggagcacagatgggc
gtgatgcaaggaccaatgggccctatgggtcctcgaggaccacctggcccctccggagct
cctggcccacaaggtttccaaggcaaccccggagaggctggagagcctggatcagctggc
cccctgggtccccgtggtcctcccggaccctctggcaaacctggagatgacggtgaggct
ggcaaacccggcaaaggtggtgagcgtggaccttctggtcctcagggagctcgtggattc
ccaggaactcccggtctgcctggaatcaaggggcacagaggttatccaggtcttgatgga
ctcaagggagagggtggagctgctggttctaagggtgagtctggtgctcccggtgagaac
ggcgctcctggaccaatgggaccacgtggtctgcccggtgagagaggtcgtcccggaccc
tctggtgctgctggtgctcgtggtaatgacggtctgtctggccctgctggtcctcctggc
ccagttggtcctgctggtgctccaggcttccccggctctccaggttctaagggagaagct
ggccccaccggtgctcgtggacctgagggcgctcagggaccccgtggagaatcaggaacc
cccggatctcccggacccgccggcgcatctggtaaccctggtactgacggtattggtgga
gctaaaggatcagccggtgctcctggtatcgctggcgcgcctggcttccccggaccccgt
ggtcctccaggtccccagggagccactggaccgctcggaccaaagggaacatctggtgaa
cccggtatcccagggttcaagggagaggctggacccaagggagagctgggaccagccggt
ccccaaggagcccttggccctgcaggagaggaggggaagaggggacccaggggagagccc
ggcgctgctggacctctcggaccacccggagagagaggcgcccccggtaaccgtggtttc
ccaggtcaggatggtctggctggtcccaagggagcccctggcgagcgtggcgtcggcggt
gtgtctggccctaagggagccggtggtgaccctggtcgtcctggagagcccggtcttcct
ggtgcaagaggtcttactggtcgtcctggtgatgctggtcctcaaggcaaagttggacct
ggtggtgctgctggtgaggatggtcgccccggtccccctggcccaatgggagcccgcggt
cagcctggtgtaatgggattccccggacccaagggagccaacggtgagcctggcaaggga
ggagagaagggacttcttggtgccccaggtctgagaggtcttcctggtaaggatggtgag
actggagcagctggacctcctggccctgctggccctgctggagaaagaggagagcaagga
cagcctggaccttctggcttccagggtctgcccggacctcctggcccacctggtgaggga
ggcaagcccggtgacatgggtgttccaggagagggtggagctgctggtatcactggaccc
agaggtgagcgtggtttcccaggagagagaggaggtgctgggcctcaggggctgcaggga
ccccgtggtctgcctggaactcctggaactgatgggcccaagggagcgatcggaccaggt
ggtgcatcgggtgcccagggaccccccggtctgcagggtatgcccggagagagaggagcc
tcaggcatccccggacctaagggagacagaggcgacaatggagagaagggacctgagggt
gcttctggcaaagacggctcaagaggtttgactggtcccattggtcctcccggcccagct
ggtcccaatggagagaagggtgaatctggtccctctggaccttctggtgctgctggtgcc
cgtggtgctcctggtgacaggggcgagacaggacctccagggcctgctggtttcgctggg
cctcctggatctgatggtcagcccggagccaagggagagcagggagagggtggacagaag
ggagacgctggtgcccccggaccccaggggccctccggagctcctggaccttccggacct
actggcgtttctggacctaaaggtgctcgcggtgctcagggaccccctggtgccactggt
ttccctggagctgccggcagagtgggaccccctggtcccaatggtaaccctggtgctgct
ggtcccgctggcccttctggtaaagatggtcctaaaggtgtgcgtggagacggtggaccc
ccaggcaggcagggagacgctgggctgcgtggagccgctggagcccctggagagaaggga
gatgctggagaggatggtccccctggtcccgatgggccttcaggtccttcaggtctggct
ggacagcgtggtattgttggtcttccaggacagcgtggagagagaggtttccctggcctg
cccggaccctctggagagcctggtaaacaaggagctcctggtggaggcggagaccgtgga
gcccctggcccagtgggaccccctggactgactggacccgctggagaacctggtagagag
ggcaacgctggttctgatggaccccctggtagagatggagccactggaatcaagggtgac
cgtggtaacaccggacctgctggtgctcctggttccccaggtggtaatggtgcccccggc
cccgtcggccccactggcaagcagggagacaggggagaggctggagctcaaggacccgct
ggacctgccgggcctgctggagccagagggatggctggaccgcaaggaccccgtggagac
aagggtgaggctggagaggggggcgagagaggacagaagggacacagaggattcaccggt
ctgcagggtctgcccggacctcccggtcaagctggagaccagggtgcctctggacctgcc
ggaccaagtggatcaagaggacctcccggacctgttggtccctctggaaaggatggttcc
aacggtatgcccggtcccattggaccccccggaccccgtggtcgctccggagagactggt
ccctctggtccccctggaaactctgggccccctggtcctcctggtcctcccggtcctggc
atcgacatgtctgccttcgctggcctgtcacagcctgagaagtcacccgatcccctgagg
tacatgagggccgaccaggcctccggaaacctgaggacgcacgatgctgaggttgacgcc
acactcaagtccctcaacaaccagatcgagaacatccgctcccctgagggctccaagaag
aaccctgcacgtacctgcagagacctgaagctgtgccaccccgactggaagagtggtgag
tactggatcgaccctaaccagggctgcaccatcgacgccatcaaggtctactgtaacatg
gagtctggagagtcctgtgtctaccccaagcccgccagcatccccaagaagaactggtgg
tccagcaagagcaagtctgccaaacacatctggttcggagagaccatgaacggaggattc
cacttcagctatggcgatgacagcctggcagccaacacagccagcatccagatgaccttc
ctgcggctgctgtccaccgaggctagccagaacctcacctaccactgtaagaacagcgtg
gcctacatggacggggccacgggcaacctgaagaaggccgtgctgctgcaggggtccaac
gatgtggagatcagagccgagggcaacagccgcttcacgtacagcgtcatggaggacggc
tgcacgaaacacacaggagcatggagcaagacagtgattgagtacagatcacagaagacc
agccggctgcccatcgtggacattgctcccgtggacattggaggagcggaccaggagttt
ggagttgacgtcggcgccgtctgcttcttgtaa
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