Coregonus clupeaformis (lake whitefish): 121574815
Help
Entry
121574815 CDS
T08357
Name
(RefSeq) E3 ubiquitin-protein ligase PDZRN3-B-like isoform X1
KO
K15682
ligand of Numb protein X 3/4 [EC:
2.3.2.27
]
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
cclu04121
]
121574815
Enzymes [BR:
cclu01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
121574815
Ubiquitin system [BR:
cclu04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Ligand of Numb proteins
121574815
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
zf-C3HC4_2
zf-C3HC4
zf-RING_UBOX
zf-RING_2
zf-C3HC4_4
zf-RING_5
zf-C3HC4_3
Prok-RING_4
Sina_ZnF
zf-TRAF
PDZ_Tricorn
zf-rbx1
zf-RING_6
U-box
RING_XB3-XBAT31
LemA
TRAF2_zf
TRAF3_RING
Motif
Other DBs
NCBI-GeneID:
121574815
NCBI-ProteinID:
XP_041743344
LinkDB
All DBs
Position
10:complement(33759464..33889803)
Genome browser
AA seq
1058 aa
AA seq
DB search
MGFELDRFKGAVDPDFKCNLCNKVLEDPLTTPCGHVFCANCVLPWVVQQSSCPVKCQRIS
TKELNHVLPLKNLILKLDIKCDNHARGCEKVVKLQHLAEHAEMCDYSPAKCRNKGCNEVL
DLKDMDAHMRESCDYRPVGICHSGCGLMLTHKEQKLDTHCCLKAMKAHNSALHGKVVSLD
KEFKKQSLKSSKREKSLLAQLSAVHNELQMTALKYQKKFTEYSARIDSLTKTLAPPCKGG
ETKNVTAILHRKGGSLGFNIVGGRPCADDHVSTSNEGIFVSKIIEKGPTDKEGGLQIHDR
IMEVNGKDLSKVTHNQAVEVFRTAKEPIMVQVLRRVPRPKPSIPASDTQVVDISTQTDIT
FQHIIALTKLPAAAPTVAVLEQYLMPEEHSPGHEYFDPNDFLEGMQLEMEREELEYEEVD
LYRANIQDKLGLTVCYRTDDEDETGIYVSEIDPNSIAAKDGRIREGDRIIQINGIEIQNR
EDAVALLTSEENQNVCLLVARPEIQLDEGWMDDDRNDFLDDLHMDMLEQQHHQAMQFTAS
MLQQKKHEEDGGTTDTATLLSNHHEKDSGVGRTDESTRTDESTRNDESSEQENLGDDQTT
ASNTLGSRRMLTYSQDTLGSTDLPFSSESFISADYDHADFLGIPADECERFRELLELKCQ
VRSAGGPQGLYCQSAGSGSAEEGVDKELDILNEELRSIELECLNIVRAHKMQQLREQYRE
SWMLHNSGFRNYNTSVDVRRHELSDINELPEKSDKDSSSAYNTGESCRSTPLTLELSPDN
SLCRGAENQGEPGAYSSAGLNNRILKPLLSPVQESDGPSRIRPSSSKESECGLQAEETEC
KLGESTHKLAQPRSPYKHAHIPAHAQHYQSYMQLIQQKSAVEYAQSQMSLVSLVSRGDPV
TPGDMLEPKKEWKVKIRSDGTRYITKRPIRDKLLKERALRIREERSGMTTDDDAISELKI
GRYWSKEERKQHAVRAKEQKQRREFMKQSRADCLKEQASLDDDKKEPNIIELSHKKMMKK
RNKKIFDNWMTIQELLTHGAKSPDGTRVYNSLLSVTTV
NT seq
3177 nt
NT seq
+upstream
nt +downstream
nt
atgggatttgagttggatcggtttaaaggggctgtggacccagattttaaatgcaacttg
tgtaataaagttctagaagacccgctcactactccgtgtggtcacgtcttctgcgcaaac
tgtgtgctgccttgggttgtccagcaaagcagctgccccgtcaaatgtcaaaggatctcc
acgaaagagctgaaccacgttctccccctgaaaaacctgattctgaagctggacataaag
tgtgacaaccatgccagaggctgtgaaaaagtggtaaagctgcaacatctagcagagcac
gccgagatgtgcgattactcaccggccaaatgcaggaataaaggatgcaacgaggtgctc
gatctgaaggacatggatgcccatatgcgcgaatcgtgtgattacagaccggtcgggata
tgccacagtggatgtggcttgatgctcacccacaaagagcaaaaactagacacccattgc
tgtttgaaagccatgaaagcacataatagtgcattgcacgggaaggtggtcagcttggac
aaagagttcaagaagcaatctttgaaatcaagtaaaagagagaaatcacttcttgctcaa
ctctccgctgtgcacaatgaactacaaatgacagcactgaagtatcagaaaaaattcact
gaatacagtgcaaggatcgattcgctgaccaagacccttgctcccccgtgcaagggcggg
gagaccaaaaacgtcacagccatccttcatcggaagggaggttctctgggcttcaacatc
gtgggaggacgaccatgtgcggacgaccatgttagcacttcgaatgaaggaatttttgta
tccaagatcattgagaagggaccaacagacaaggagggaggccttcagatccacgacaga
ataatggaggtgaatgggaaggacctgtccaaggtcacacataaccaggcggtggaggtt
ttccgcacggccaaggagcccatcatggtccaagtgcttcgccgggtcccccgccccaaa
ccctccatccctgcctcagacacccaggtggtagacatcagcacccagacagacatcacc
ttccaacacatcattgccctcaccaagctccctgccgccgcccccaccgtggctgtactg
gagcaatacctaatgcctgaggagcattcccctgggcacgagtactttgaccccaatgat
ttcctggagggcatgcagctggagatggagcgagaggagctggaatatgaggaagtggat
ttgtacagagccaacatccaggacaagcttggtttgactgtctgctacaggactgacgat
gaggacgagactgggatctacgtcagtgagattgacccaaacagcatcgctgcaaaggat
ggcaggatcagagagggagatagaattatccagatcaatggaattgagatccagaaccga
gaggatgctgtggctttgttgaccagtgaggagaatcagaatgtgtgcctactggtggcc
agaccagagatccagctggatgagggttggatggatgacgacaggaacgacttcctggat
gacctccacatggacatgctggagcagcagcaccaccaggccatgcagttcaccgccagc
atgctgcagcagaagaagcatgaggaggatggtggaacaacggacacagccaccctgttg
tccaaccaccacgagaaggacagtggggttggccgcaccgacgagagcacgcgcaccgac
gagagcacgcgcaatgacgagagctctgagcaggagaacctgggggacgaccagaccacg
gcctccaacacgctgggcagccgcaggatgctgacctatagccaggacaccctgggtagc
actgacctgcccttcagcagtgagtccttcatctctgcagactatgaccatgctgacttc
ctgggtatccccgccgacgagtgcgagcgcttccgagagctcctggagctgaagtgccag
gtgaggagcgcggggggcccccagggcctgtactgccagagtgccgggtccggaagtgcc
gaggagggggtggacaaggagctggacatcctgaacgaggagctgcgcagcatcgagctt
gagtgcctcaacatcgtccgggcccacaagatgcagcagctgagggaacagtaccgcgag
tcctggatgctgcacaacagcggcttccgcaactacaacaccagcgtcgatgtgcgccgc
cacgagctctccgacatcaacgagctgcccgagaaatcggacaaggacagctccagcgcc
tacaacaccggagagagctgccgcagtacccccctcaccctggagctgtccccagacaac
tctctctgcaggggggcagagaaccagggcgagcccggggcctacagcagcgcagggctc
aacaacaggatcctcaagcccctgctgtctcctgtccaagaatccgatggccccagcaga
atcaggccctcctcctctaaggagtctgagtgtggcctgcaggcggaggagacggagtgt
aagctgggagagtctactcacaagctggcccagccccgctccccatacaaacatgcccac
atcccggcacacgcccagcactaccagagctacatgcagctgatccagcagaagtctgcc
gtggagtacgctcagagccaaatgagcctggtcagtctggtcagccgcggtgaccctgtg
acccccggagacatgctggagcccaagaaggagtggaaggtgaagatccgcagcgatggc
acacgctacatcaccaagaggcccatcagggacaagctgctgaaggagcgcgccctgcgt
atccgcgaggagcgcagcggcatgaccacagacgatgacgccatcagcgagctgaagata
ggacggtactggagcaaggaggagaggaagcagcatgcggtgcgcgccaaggagcagaag
cagcgccgcgagttcatgaagcagagccgcgctgactgcctgaaggaacaggccagcctg
gatgacgacaagaaggagcccaacatcatcgagctgagccacaaaaagatgatgaaaaag
aggaacaagaaaatctttgacaattggatgactatccaggaacttttgacccatggtgct
aagtcgcctgacggcacgcgagtgtacaactccctcctgtccgtcaccacagtgtag
DBGET
integrated database retrieval system
