Coregonus clupeaformis (lake whitefish): 121574986
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Entry
121574986 CDS
T08357
Symbol
cdh4
Name
(RefSeq) cadherin-4 isoform X1
KO
K06797
cadherin 4, type 1, R-cadherin
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04514
Cell adhesion molecule (CAM) interaction
cclu04519
Cadherin signaling
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecule (CAM) interaction
121574986 (cdh4)
04519 Cadherin signaling
121574986 (cdh4)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
cclu04515
]
121574986 (cdh4)
Cell adhesion molecules [BR:
cclu04515
]
Cadherins
Major cadherins
121574986 (cdh4)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin
CADH_Y-type_LIR
Cadherin_pro
Cadherin_FAT4_N
Ig_CLSTN
Fibulin_C
F59B103_C
Stevor
DUF4064
NCMAP
DUF5385
CD34_antigen
Motif
Other DBs
NCBI-GeneID:
121574986
NCBI-ProteinID:
XP_041743642
LinkDB
All DBs
Position
10
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AA seq
929 aa
AA seq
DB search
MNFVSVVILACTLLVGTSWGTKAGQPPIPPCRPGFSESFYTVFVSRDLLRGQSILKDTSL
SRERVKFEDCQHSKVVGFESSDPNFSVRPDGSVYAEQETVNLSEPVQFMVTARGGHDPHI
WETTVKLALAGHQPSVPVSQIGVEDMIARAWDSNPRVIKFPRKHQRSSSANGLRRQKRDW
VIPPINVPENSRGPFPQMLVRIRSDQDLEKGIRYSITGAGADQPPIDVYNIDPVHGKMFV
TRPLDREERASYHLRAHAVDMNGNKVESPIDLYIYVIDMNDNRPEFQNQVYNGSVAEGSK
PGTLVMQVTANDSDDDTTANGMVRYRILSQTPHMPIPNMFTINSETGDIFTMAAGLDREK
VSQYIIIVQATDMEGNLNFGLSNTATALISVTDINDNPPELTARTFSGEVPENRVNVVVA
NLTVIDRDQPHSPNWAAQYRIASGDPQGHFLIRTNPVNNDGMVTVVKPVDYEQNRAFMLT
VIVSNKAPLASGIQSSLQSSAGVTISVQDVNESPVFPTNPKSIRFEEGVPAGTTLTVFAA
QDPDLFIQQTVRYSKLSDPANWLRVNRTNGQITTMAVLDRESMYVRNNIYEATFLAADNG
KSGSPPASGTGTLQIHLIDVNDNAPVLMPKEAQVCERANPRSKVNITASDADADPHVGPF
VFELPSYPPSVRRNWTVSRISGDYAQLRLRIPYLDTGVYDVPIIVSDSGNPPLSNRSTIK
VKVCPCDDNGDCTTTGAVAAAGLGTGAIIAILICIIILLVLVLVFVMWMKRREKERQAKP
LLIDPEDDVRDNILKYDEEGGGEEDQDYDLSQLQQPESLEHIISKPVGVRRVDERPIIAE
SQYPVRPSLPHPGDIGDFINDGLRAADNDPTAPPYDSLLVFDYEGSGSTAGSVSSLNSSS
SGDQDYDYLNDWGPRFKKLADLYSGGDDD
NT seq
2790 nt
NT seq
+upstream
nt +downstream
nt
atgaattttgtatccgttgttatactggcgtgcaccttacttgtgggcacatcttggggg
accaaggcaggtcaaccacctatacccccatgcagaccaggcttctccgagagtttctac
actgtgtttgtctcgagggatctactgcgaggtcagagcattctcaaagacaccagcctg
tcgagagaacgtgtgaaatttgaggactgccagcacagtaaggtggtgggcttcgagagc
agtgaccctaacttcagtgtgcgtcctgacggctcggtgtacgcggagcaggagacggtc
aacctgtcagaaccggtccagttcatggtgaccgcccgcggaggtcatgaccctcacatc
tgggagaccacggtcaagctggccttggctggacaccagccctctgtccctgtgagtcag
attggagtggaggatatgattgcaagggcctgggactctaatcccagggttatcaagttt
ccacggaaacatcaaagaagctcatctgccaatggactgagacgacagaagcgggactgg
gtcatcccaccaatcaatgtgcccgaaaactccagaggacccttcccacaaatgcttgtc
agaatccgctcggaccaggacctggagaaagggatccgctacagcatcactggagcaggg
gcggaccagcctcccattgacgtgtacaacatcgaccctgtgcacggcaagatgtttgtc
accagaccgttggacagagaggagagggcctcctaccatctgcgggcccatgctgtggac
atgaatgggaacaaggtggaaagccccatagacctgtacatctacgtcatcgacatgaat
gacaaccggccagagttccagaaccaggtctacaatggttctgtggctgaaggctctaag
ccaggcacgttggtgatgcaagtgacagccaacgactcagatgacgacaccacagccaat
gggatggtgcgctaccggatcctgtcccagaccccccacatgcccatccccaacatgttc
accatcaacagtgagacgggagatatcttcaccatggctgctggcctggacagggagaaa
gtgtcccagtacatcatcatcgtccaggccacagacatggaggggaacctgaactttggc
ctgtccaacacagccaccgccctcatctctgtgaccgacatcaacgacaaccctcccgag
ctgaccgccaggacgttttcgggggaggtcccagagaacagggtgaacgtggtggtggcc
aacctgacagtgattgacagggatcagccccatagccctaactgggctgcccagtaccgc
atcgccagcggagacccccaaggtcacttcctcatccgcaccaaccctgtcaacaacgac
ggcatggtcactgtggtcaagccggtggactatgagcagaacagagcctttatgctaact
gtgatagtctctaacaaggcccccctggccagtgggatccagtcttctctccagtcttca
gcgggggtcaccatctccgtacaggatgttaatgaatcccctgtcttccccaccaacccc
aagtccatccgttttgaggagggtgtccctgcaggcaccacgctcaccgtgtttgctgcc
caagaccctgacctcttcatccagcaaactgtcaggtactcaaagctgtctgacccagct
aactggctgagggtcaacaggaccaatggtcagatcaccaccatggctgtgctggacagg
gagtctatgtatgtcaggaacaacatctatgaggccaccttcctggctgccgacaatggt
aagtctggttctcctccggccagtggaacaggtactctgcagatccatctgatagatgtg
aatgacaatgctccggtgctgatgcccaaggaggcccaggtgtgtgagcgcgccaatccc
cgctccaaggtcaacatcacagcctccgatgcagacgctgacccccatgtggggcccttt
gtgttcgagctgccctcctacccccccagtgtccgacgcaactggaccgtctcccggatc
agtggtgactatgcccagctgagactgaggattccctacctggatacaggggtgtatgat
gttcccatcatcgtgtcggactccgggaacccgcccctctctaacaggtccactataaag
gtcaaggtgtgtccatgtgatgacaacggagactgtactaccaccggagctgtggctgcc
gccggactggggaccggagccatcatagccatactcatctgtatcatcatactgcttgtc
ctggtgctggtgtttgtgatgtggatgaagcgcagggagaaggagcgtcaggccaagccc
ctgctgatcgacccagaggacgacgtcagagacaacatcctgaagtatgacgaggagggt
ggaggagaggaggaccaggactatgaccttagccagctgcagcagcctgagtctctggag
cacatcatcagtaaaccagtgggggtgcgcagggtggacgagaggcccatcatcgctgag
tcccagtaccccgtcagacccagcctgccccaccctggagacatcggagacttcatcaac
gatggtctgagggcggcggacaacgaccccacagccccgccctatgactccctgctggtg
tttgactacgagggcagtggctccacggccggctctgtcagctccctcaactcctccagc
tcaggagaccaggactacgactacctcaacgactggggcccccgcttcaagaagctggca
gacctctacagcgggggagacgacgactga
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