Coregonus clupeaformis (lake whitefish): 121575010
Help
Entry
121575010 CDS
T08357
Name
(RefSeq) host cell factor 1-like isoform X1
KO
K14966
host cell factor 1
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03083
Polycomb repressive complex
cclu04980
Cobalamin transport and metabolism
cclu05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
121575010
09150 Organismal Systems
09154 Digestive system
04980 Cobalamin transport and metabolism
121575010
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
121575010
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
cclu01009
]
121575010
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
cclu03036
]
121575010
03029 Mitochondrial biogenesis [BR:
cclu03029
]
121575010
Protein phosphatases and associated proteins [BR:
cclu01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
121575010
Chromosome and associated proteins [BR:
cclu03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
NSL complex
121575010
HMT complexes
COMPASS/SET1 complex
121575010
MLL-HCF complex
121575010
Polycomb repressive complex (PRC) and associated proteins
PR-DUB complex
121575010
Mitochondrial biogenesis [BR:
cclu03029
]
Mitochondrial quality control factors
Regulator of mitochondrial biogenesis
Other regulator of mitochondrial biogenesis
121575010
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Kelch_5
Kelch_3
Kelch_4
Kelch_1
Kelch_6
fn3
Motif
Other DBs
NCBI-GeneID:
121575010
NCBI-ProteinID:
XP_041743697
LinkDB
All DBs
Position
10:complement(31415571..31429829)
Genome browser
AA seq
1720 aa
AA seq
DB search
MTFPGSVVSGTTSSSLQPRWKRVLGWSGPVPRPRHGHRAVAIKELMVVFGGGNEGIVDEL
HVYNTATNQWFIPAVRGDIPPGCAAYGFVCDGTRLLVFGGMVEYGKYSNDLYELQASRWE
WKKLKAKSPKNGPPPCARLGHSFSLVGNKCFLFGGLANDSEDPKNNIPRYLNDLYTLELR
AGSSVVGWDIPITYGVLPPPRESHTAVVYTEKESKKSHLIIYGGMSGCRLGDLWTLDIDT
LTWTKPSVNGTAPLPRSLHSAITITNKMFVFGGWVPLVMDDVKVATHEKEWKCTNTLACL
NLDSMAWESVLMDTLEDNIPRARAGHCSVAINSRLYVWSGRDGYRKAWNNQVCCKDLWYL
ETERPHAPSRVQLVRANTNSLEVSWGAVSTSDTYLLQLQKYDIPAATAATSPALTATSSL
PGNSPKSPAAAAPSAQNLPHTAILKVAAPQSGTGTSLVTVRANQAGKSPVTVTSLPPGVR
MMVPAQTAQGTPIGNSPQMSGMAALAAAAAATQKIPPSSGTVLNIPAGATLVKTIAVSPG
STTVKTSSPLMVSNPATRMLKTAAAQVGTATVSSPNSPNRPIITVHKSGTVTVAQQHQVV
TTMVGGVTKTITLVKSPLTMGGSGTLQISSLGKMISVVQTKPVQTSAVTGQASINPLSQL
IQTKGSLPAGTILKLVTSADGKPTTIITTSQAGGTGNKPTILNISGMSPTTSKQGTTIIK
TIPMSAIMTQPGATVTSSIGKMPYTILTTKMMTSGTPGKIITTMPKLGTATGQQGLTQVV
LKGAPGQPGTILRTVPMGGVRLVTPVTMTSVKPNVTTLVVKGTTGVTTLGTVTGTVSSSL
AGGSVASANASLATPIATLGTIATLPSQVINPTAITVSAAQASLTTATTLSTSTMSVNQP
TQVTLITTPSGVEAQPVQDLPVSFLASPTSEQPSSTGVGDAPGTVTMVCSNPPCETHETG
TTNTATTAASTIGGVQKFCSNPPCETHETGTTNTATTASANMSVPRVCSNPPCETHETGT
TNTATTTSTNMGVAMRVCTSPPSETHEMGTTNTSTTTHSIMGTNQMGTVQSSSSSLPSSP
PQTTTSAYPGTATGNQGPENLRTGTTFTPTTARSNMGSAQTGTVQSPKPAVGLTVCSNPP
CETHETGTTSTATQSSSGMGNGQTGTVQKVCSNPPCETHETGTTSTPSQASSNMAGNQTG
TGTVQRVCSNPPCETHETGTTNTATTATADGADGSTSSTETPSTTASGTTPATTQSRAIT
TVTQSTPAPGPSVPSISSITEGAAVSTEEPMQTDAATEGGDTAMETGLPPELMSEGQMRT
GLSTEELAVTAAAEAAAQARAIQAVLQAAQQVAMNEGDSGSDGQQTTTIPIVLTQQELAG
LVQQQQQLQEAQAQAQAQQQGNTQALPTEGLAPADSLNDPTSESNGHNEMVAAISSAVAS
LLPRTSTETLAPSSTFAVSSPAKLQPAASLAEMANGIEGGKLNPQPAPIKTLVKKENQWF
DVGIVKVTNMVVTHFFIPGDNSQVEDDSGAIPDYNQMKKMELQPGTAYKFRVAGINACGR
GSFSEISAFKTCLPGFPGAPCAIKISKSPDGAHLTWEPPSVTSGKIIEYSVYLAIQSTQT
AEPKTSTPAQLAFMRVYCGPNPACLVQSTSLSNAHIDYTTKPAIIFRIAARNEKGYGPAT
QVRWLQESSKDGASAKPAPKRPVSSPDVKAAGQKKARTDQ
NT seq
5163 nt
NT seq
+upstream
nt +downstream
nt
atgacatttcctggttccgtggtgtctgggaccactagttcatctctgcagccacgatgg
aagcgggttctaggatggtctgggcctgtgcctcggcccagacatggtcacagagccgtt
gctataaaggaattgatggttgtttttggaggaggaaatgaaggaattgtggatgaattg
catgtctacaacacagcaacaaaccaatggtttatccctgcggttcgtggtgatattccc
cctggatgtgctgcatacggttttgtttgtgatggcacccggcttctggtgtttggtgga
atggtggaatatggaaaatacagcaacgatctctatgagctacaggccagcagatgggaa
tggaaaaagttaaaagctaagtcccccaaaaatggcccacctccctgtgctcgacttggc
cacagtttctctctggtgggcaacaagtgcttcttgtttggagggctggctaatgacagc
gaggaccccaaaaacaacatccctagatacctgaatgatctgtacaccctggagcttcgt
gctggctccagtgttgtgggctgggatataccaattacttatggtgttttgcctcctcct
cgcgagagccacactgctgtagtgtacacagaaaaggagagcaagaaatctcacctgatc
atctatggagggatgagtggctgtcgtctgggagatctatggactcttgacattgacacc
ctgacctggactaagccatcagtgaatggcacagcacctctgcccaggagtctccactct
gccatcaccatcacaaacaagatgtttgtgtttgggggatgggttccccttgttatggat
gacgtgaaggtggcaacacatgaaaaggaatggaagtgcacaaacacactggcctgccta
aatctcgactccatggcctgggaatcagtgttgatggataccttggaggacaatatccca
agggcccgggcaggacattgttctgtggccatcaactccaggttgtatgtctggagtggc
cgtgacggttaccgtaaagcatggaacaaccaagtctgttgtaaagacctctggtacctt
gagacagagaggccacacgctccctcgagggtgcagcttgtccgtgccaacaccaactcc
ctggaggtgagctggggcgctgtgtccacctcagacacctacctgctgcagctgcagaag
tacgacatcccagctgccactgctgccacctcgccggccctcaccgccacctcttctttg
ccagggaactcgcccaaaagcccagctgcagctgctccctctgctcagaacctaccacac
acagccatcttgaaggttgcagcccctcagtctggcacgggtacctcccttgttactgtg
cgagccaaccaggctgggaaatcccctgtcactgtgacatcacttcctccaggagttcgg
atgatggttcctgcccagactgcccaaggaacgccaattggcaatagccctcagatgagt
ggcatggcagctttggctgcagctgcagcagccacacagaagatcccgccctcttcaggc
actgtgctcaacattccagcaggtgccacccttgtcaaaaccatagctgtctcccctggc
tccaccacagtcaaaacgtcatctcctctcatggtcagtaacccagccactcgcatgctg
aagacggctgcagctcaggtgggcacagcgactgtatcatcacccaactcgcccaaccga
cccatcatcactgtgcacaagtcaggcacggtcactgtagcccagcaacaccaggtggtt
accaccatggtgggaggagtcaccaagaccatcaccctggtcaagagcccccttactatg
ggaggcagcggcactctgcagatctccagccttggcaagatgatatctgtggtacaaacc
aagccagtgcagacatcagctgttacaggccaggcttccattaaccctctatcacagctc
atacagactaagggttctctccctgccggcaccatactgaagctggtgacatcagcagac
ggcaagcccaccacaatcatcaccacgtcccaggcagggggcacagggaacaagcccacc
atcctgaacatcagtggcatgtcacccaccacaagcaaacagggcaccaccatcatcaag
accatcccaatgtctgctattatgacccagcctggagccacagtgaccagcagcataggg
aagatgccctacaccatcctcaccaccaagatgatgacctctggcactccaggcaaaatc
atcactaccatgcccaagcttggcactgcaactggccagcaggggctgacacaggtggtt
ttgaagggtgctccgggccaacctggtaccattctgcgcactgtacccatgggtggagtc
cgactcgtcaccccggttacgatgacttctgttaagcccaatgtaactacactggtcgtc
aagggaacaactggtgtcaccaccctggggacagtcacaggcacagtctcctccagcctg
gcagggggaagtgtagccagtgccaatgcctctctggcaactcccattgccaccctggga
accatcgccaccctgcccagccaagtcatcaaccccactgccatcactgtgtcagcggcc
caggccagtctgaccacagccactaccctgtccacctccaccatgtcggtgaaccagcca
acccaggtgactctcatcaccacccccagcggggttgaggcccagccagtgcaggacctg
cctgtgtccttcctggcctcacccacctctgagcagccctcctccactggggttggggat
gcccctggtactgtcaccatggtctgctccaaccccccctgtgagacccacgagacagga
accactaacacagcaaccacagccgcctccactataggtggggtgcaaaagttctgctcc
aaccccccctgtgagacgcatgagacgggcaccaccaacacggccaccactgcatctgct
aacatgtcagtgccgcgtgtctgctccaaccctccttgtgagacccacgagactggaacc
accaacaccgcaacgaccacttccaccaacatgggagtggcaatgagggtgtgtacaagc
cctccgtcagagacccatgagatgggcaccactaacacctcgacgaccacccactccatc
atgggcactaaccaaatgggtactgtccagagtagctcatcatctctgccctcctctccc
cctcagacgaccacctctgcttaccccggaactgccacaggcaaccagggaccagaaaac
ctgcgcaccggcaccaccttcacccccaccacagcacgctctaacatgggctcagcccag
accggcactgtgcagagtcccaagccagccgtgggccttacggtttgctctaacccgccc
tgcgagacacatgaaacgggcacaaccagcactgccactcagtcctcgtccggcatgggt
aacgggcagactggcactgtgcagaaggtgtgctcaaacccaccctgcgagacccacgaa
acggggaccaccagcaccccgtcccaggccagctccaacatggctgggaaccagacagga
acagggacggtgcagagggtgtgttccaaccccccctgtgaaacccacgagactggcacc
accaacacggcaactactgccacagcagatggagcagacggaagcaccagcagtacagag
actccctccaccactgcatcaggaacaaccccagccaccacccagagcagagccatcact
actgtgacccagtccacaccagccccggggccctcagtaccttccatttcttcaatcact
gagggtgcagcagtttccacagaagagcccatgcagactgatgcggccacagagggggga
gacaccgctatggagactgggctccccccagagctgatgtcagagggacagatgagaaca
ggtctgtctacagaggaactggctgtgactgcagcagcggaggcagcagcacaggcccgg
gccatccaggcagttctccaggcagcacagcaggtcgccatgaacgagggtgattctggc
tcagacggacagcagaccaccacaatccccatcgttctgacccagcaagagctggcgggc
ctggtccagcagcagcagcagctccaggaggctcaggcccaagcccaggcccagcagcaa
ggaaacacccaagccctgcccactgagggcctggctcccgcagacagcctcaatgacccc
acgtctgagagcaacggacacaatgagatggttgcagccatttccagtgcagtggcatca
ctgctgccgcgcacctccactgagactttggccccctcaagcacatttgctgtttccagt
ccagccaagctgcaacctgcagcttctctagcagagatggccaatggcatcgagggtggg
aagctaaaccctcaaccagcccctatcaagacacttgtaaaaaaagagaaccaatggttc
gatgttggaatcgtcaaggtgacaaacatggtggtcacacacttcttcatcccaggggac
aattctcaagtagaggatgactctggtgccatcccagactacaaccagatgaagaaaatg
gagctgcagcctggcacagcctacaagttccgtgtcgctggcatcaatgcttgtggtcgt
ggttccttctcagagatctctgctttcaagacctgtctaccaggcttcccaggagcacct
tgtgccatcaaaatcagcaagagcccagatggtgcccacctcacctgggagcctccttcg
gtgacatcagggaagatcattgagtattctgtgtacctggccatccaaagcacccagaca
gctgagcccaagacctccaccccagcccagctggccttcatgcgggtgtactgtgggccc
aaccccgcctgcctggtgcagtccaccagcctctcgaacgcccacattgactacaccacc
aagcccgccatcatcttccgcatagccgcacgcaacgagaagggctacggccctgccaca
caagtccgatggctgcaagagtccagcaaagatggcgcctcagcaaaaccagccccaaaa
agaccagtttcctcacctgatgttaaggctgctggtcaaaagaaagcaagaacggaccag
tga
DBGET
integrated database retrieval system
