Coregonus clupeaformis (lake whitefish): 121575107
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Entry
121575107 CDS
T08357
Name
(RefSeq) transcription factor SOX-4-like
KO
K09268
transcription factor SOX11/12 (SOX group C)
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cclu03000
]
121575107
Transcription factors [BR:
cclu03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
121575107
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
HMG_box
HMG_box_2
HMG_WDHD1
Rox3
SOG2
Motif
Other DBs
NCBI-GeneID:
121575107
NCBI-ProteinID:
XP_041743893
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Position
10:complement(41760009..41763600)
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AA seq
397 aa
AA seq
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MTPAVTLSRASSSIMVQQRGHKYLAVMDSDLSQEVLVGLGADEGEEVFGPSPSNKDPNWC
KTPTGHIKRPMNAFMVWSQIERRKIMEQWPDMHNAEISKRLGKRWKLLPDYEKIPFIKEA
ERLRLKHMADYPDYKYRPRKKSKSSMPVRVGDKVPLKTGKSHTGGRAAASATSTATSRGL
KVRTPSSKHRASFHGNKFKGYDEGISDDDTVDVELASQGACQPGGQRPALGVFHHQQATM
TPGEQQPHLTAQLRVKLPTTTSHQPTSTLPVGLSSGSPVPQSLPESSPRVSSSSESRTPL
SSTGRSSTPTSTSSSSFVSSASSDEELDEEILHIISNANFDSMPMDCSTLDKDFDAAFHT
NSGSHFDFPDYCTPEVNEMISGDLLVPSISDLVFKIY
NT seq
1194 nt
NT seq
+upstream
nt +downstream
nt
atgactccagccgtcactctgagtagagcatcttcctccatcatggtacagcaaagggga
cacaaatacttagcagttatggacagtgatttgagccaagaggttttggtaggactggga
gcagatgaaggggaggaggtttttggaccgtcgccctccaacaaagaccccaactggtgc
aagactcccacgggtcacatcaagaggcccatgaatgcattcatggtctggtcgcagatc
gagagacggaagatcatggagcagtggccggatatgcataacgcagagatctccaaacgc
ctaggcaagcgctggaaactcctccctgactacgagaagatccccttcatcaaggaagcg
gagcgacttcggctaaagcacatggctgactaccccgactacaagtaccggccccggaag
aagagcaagagctccatgcccgtgcgggtcggggacaaggtccccctgaagacaggcaag
tcccacacgggtggtcgcgcagccgcttccgccacctccacagccaccagcagagggctc
aaggtccgaacgccttcctccaaacacagagccagcttccacggcaataagttcaaaggt
tacgacgagggcatcagcgatgatgacacagtggatgtagagctggccagtcagggggca
tgccagccaggagggcagaggccggccttgggtgtcttccaccaccagcaggctactatg
acccctggggagcagcagcctcatctcacagcccagctcagagtcaaattgcccaccacc
acctcccaccagcccacctctaccctccctgtgggcctctcctctgggtctcctgtaccc
cagagcctcccagagtcatcccccagggtgtcctcttcctctgagtcccgtacgcccctc
tcctccaccggccgctcctccacccccacctccaccagctcctcctcatttgtgtcgtcg
gcctcctccgacgaggagctggatgaggagatcttgcatatcatctccaacgccaacttc
gacagcatgcctatggattgctccactctggacaaagactttgacgctgcgtttcacacc
aactcaggatcccacttcgatttccccgactactgcaccccagaagtgaatgagatgata
tccggggacttgctggtgcccagtatctctgacctggtgttcaagatctactga
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