KEGG   Coregonus clupeaformis (lake whitefish): 121575174
Entry
121575174         CDS       T08357                                 
Name
(RefSeq) heterogeneous nuclear ribonucleoprotein A1 isoform X1
  KO
K12741  heterogeneous nuclear ribonucleoprotein A1/A3
Organism
cclu  Coregonus clupeaformis (lake whitefish)
Pathway
cclu03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:cclu00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    121575174
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cclu03019]
    121575174
   03041 Spliceosome [BR:cclu03041]
    121575174
Messenger RNA biogenesis [BR:cclu03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Other transport factors
     121575174
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     121575174
Spliceosome [BR:cclu03041]
 Common components
  Common spliceosomal components
   hnRNP proteins
    121575174
SSDB
Motif
Pfam: RRM_1 RRM_7 RRM_PARP14_3 Nup35_RRM_2 RBD_AKAP-17A RRM_3
Other DBs
NCBI-GeneID: 121575174
NCBI-ProteinID: XP_041744059
LinkDB
Position
10:39468961..39476034
AA seq 365 aa
MSKESPREPEQLRKLFIGGLSFETTDESLRTHFERWGSLTDCVVMKDPVTKRSRGFGFVT
YSSVDEVDASMEARPHKVDGRQVEPKRAVSREDSSRPGAHTTVKKIFVGGIKEDTEEHHL
RDYFDQFGKIEVIDIMTDRTSGKKRGFAFVTFDDHDAVDRIVIQKYHTVNGHNCEVRKAL
SKEDMNRSGPRGGNFGRGGGYGGGFGGGRGGGGYGDNDGYNNYGGNGGSYGGGPGGYGGG
NRGYGGGGGGSGGYGNQGGSYGGGGYDNYNNGGGGGGSYRGGNYGASGGGGSSSGSGGGG
GDYNDFGNYNSQSSSSYGPMKGGGGYSGGSGGGRSSGPYGGGGGGGGYGGGSGGGYGGGS
GGRRF
NT seq 1098 nt   +upstreamnt  +downstreamnt
atgtcgaaggagtctccccgtgagccggagcagctccgcaagctctttattggtgggctg
agcttcgagaccaccgacgaaagtttgcggacccattttgaacgatggggatccctcaca
gattgtgtggtaatgaaagatccagtcacaaagagatcgaggggctttggttttgtcaca
tacagctctgtggatgaagttgatgcatcaatggaggctcgtcctcataaggttgatggc
cgccaagtggagcccaagagagcggtgtccagagaggattcctcaaggccaggtgctcac
accaccgtgaagaagatctttgtgggtggcatcaaggaggacacagaggagcaccacctt
agggactactttgatcagtttggcaagatcgaagtcatcgacatcatgactgataggacc
agtgggaagaagaggggttttgcctttgttacatttgatgatcatgatgcagttgatagg
attgtcatccagaagtatcatacagtgaatggtcacaactgtgaagtgaggaaggctttg
tcaaaggaagacatgaaccggtcagggccaagaggtggaaactttggtagaggtggcgga
tatggaggtggttttggtggagggagaggaggtggaggatatggtgataacgatgggtac
aataactatggaggcaatggtggcagctatggtggaggtcccggcgggtatggtggcggc
aaccggggctatggcggaggaggaggaggcagcggcggctatggcaaccagggtggcagc
tatggaggaggaggatacgacaattacaacaatggcggaggtggtggtggaagctacaga
ggtggtaactacggagctagcggtggtggcgggagcagcagtggaagtggtggtggtggt
ggagactacaatgactttggcaattacaacagccagtcgtcctccagctacggcccaatg
aaaggaggtggcggctatagcggcggcagtggagggggcaggagcagcggcccatatggt
ggtggtggtggtggtggtggttacggaggaggctccggtggtggatatggagggggctcc
ggaggccgaaggttctag

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