Coregonus clupeaformis (lake whitefish): 121575209
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Entry
121575209 CDS
T08357
Name
(RefSeq) LOW QUALITY PROTEIN: protein polybromo-1-like
KO
K11757
protein polybromo-1
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
121575209
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cclu03021
]
121575209
03036 Chromosome and associated proteins [BR:
cclu03036
]
121575209
Transcription machinery [BR:
cclu03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
121575209
Chromosome and associated proteins [BR:
cclu03036
]
Eukaryotic type
Chromatin remodeling factors
PBAF complex
121575209
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bromodomain
BAH
HMG_box
HMG_box_2
HMG_WDHD1
Motif
Other DBs
NCBI-GeneID:
121575209
NCBI-ProteinID:
XP_041744099
LinkDB
All DBs
Position
10:15461301..15477030
Genome browser
AA seq
1655 aa
AA seq
DB search
MGSKRRRATSPSSSVSGGDFDDGQPSSSASSVGRKRRRTSNIPTVDPIAVCHELYNTIRD
YKDDQGRMLCELFIRAPKRRNQSDYYDVVTQPIDMMKIQQKLKMEEYDDVEQITADFQLL
FNNAKAYYKSDSPEYRAACKLWDLYLRTKNEFVQRGDYDDDDEDGDDAQDNPGGSNEDEN
APSCLKEVLEQLLDAVVTFSEPSGRLVSDLFQKLPSKVQYPDYYAIIKDPIDLKIIAQKI
QMSHYRSVGAMAKDIDLLAKNAKMYNEPGSQVFKDANTIKKIFAQRKTEIEHAEPIKSSI
RIRQVTPXTLXKVEFTSQTNNMQHLEAYFHELNSCAXCVRNRRSAQGDRLSAITMALQYD
SDDDGILAGSVHYDEGESEAESMHHSMDMSNPIFQLYEAVRGGRNSQGQLISEPFLQLPS
RKDYPDYYQQISQPISLHQIRNKMKNNEYESVDQLDADLTLMFENAKRYNVPHSSIYKRV
LKLQHIQQLKRTELLRREDDSMDGDSMLSSTMSDTGSTKRKSHKKNTKKNRMKALYSAVT
EAREMGTGRRLCELFMIKPSKKDYPDYYKIILEPVDLRIIDHNIRSEKYMTEDALLEDMK
LMFRNARHYNEEGSQVYNDANVLEKVIKDKRRDLGPTPDDDDMSPKLKIRKSGITPKKSK
YLTPLQQKLNELYEAVKNFTDKRGRRLSTIFLRLPSRAELPNYYIAIKKPVDMEKVRSHM
LANKYQDVDALVEDLVLMFNNACTYNEPESLIYRDALVLHRVLLETRRDLEGGEDAHVPD
VARLIQELIRSLFVSVLGHQDDEGRCYSDSLAEIPATDPSSPDRPLLNFEIIRTNVDRGR
YKRLDVFQDHMFEVLEKARRMHRTDSEIFEDAVELQQFFIRIRDELCKNGEILLTPALSY
TSKHLHSDVEKEKKEKLPKEIEEDKLKREEEKKEAEKSEDPAGGAWQSGLQRTYSQDCSF
KDSMYHVGDYVYVEPAEPNLQPHIVCIERLWQDDAGEKWLYGCWFYRPNETFHLATRKFL
EKEVFKSDYFNKIPVSKILGKCVVMFVKDYFKLHPEGFRADDVYVCESRYSAKTKSFKKI
KMWTMPLSSVRFVPRGVPLPVVRVASMFAPKQEEEKPAEIQEEGKALDTMDKEREDVTLD
MTNGEPGCQYYEQLCYNDTWLKVGDCIYIRSHGLVRHRVGRIEKMWMRDGAAYFFGPIFI
HPEETEHEPTRMFYKKEVFLSNLEESCPMTCIIGKCAVSSFKEYLSCRPTEVPEEDVLLC
ESRYIESEKQMKKFKGLKRFSLSGKVVEDEIYYFRKLIVPQKEPSPLLDRKIAVLEAKFA
DMTDEELEDLGEDDGELGDTSIPQLQSPMAGIDMDMPYTPPQVRAATYTGQMCGHVVKST
PKSMKGISKKEGSKRKINMSGYILFSSEMRAVIKAQHPDFSFGELSRLVGTEWRNLESPK
KAEYEERAAKVAEQQERERAAQQLAFPRAGMMGTYMPHMMLQDLVDGMFSMTGMPPHHMR
LPLLPHHHLMPGIPGFPGMPYPGVNTGAPGAYGTQMIGLGQQAPPPYPGQGQPALQQPST
PIFVAPPPKPKRLLHSEAYLKYIEGLNAESSTISKWDQTLSARKKDVRLTKEQESRLPSH
WLKSKGAHSTMADALWRLRDLMLRDTLNIRQTYNL
NT seq
4968 nt
NT seq
+upstream
nt +downstream
nt
atgggctcaaaaaggagaagggctacgtccccctctagtagtgtcagtgggggggacttt
gacgatggacagccctcatcctcagcatcttcagtaggtcggaaaaggagaagaacctca
aacattccaactgttgatccaattgcagtatgccatgaattgtacaacacaatcagagat
tataaggatgaccagggaagaatgttatgtgagctgttcataagagcacccaagagacgg
aatcaatcggattactatgacgttgtgactcagcccattgacatgatgaagatccagcag
aagctgaagatggaggagtacgatgatgtggagcagataacggctgactttcagctctta
ttcaacaatgcaaaggcatactacaagtcagattctccagagtacagagcagcctgtaag
ttgtgggacctctacctgcgtaccaagaatgagtttgttcagcggggggattatgatgac
gatgatgaggacggggacgatgcacaagataatcccggagggtccaatgaggatgagaat
gcacccagttgcctgaaggaggtccttgagcagctgctggatgcggtggtgacgttctcc
gagccctcagggcgtctagtcagtgatctattccagaaactgccctctaaagtgcaatac
ccagactattatgccataataaaggacccaatagatctgaaaatcattgcccagaagata
cagatgagccactacagaagtgttggtgccatggcaaaagacatagatcttctggctaag
aatgccaaaatgtacaatgagcctgggtcacaagtgtttaaggatgccaacaccatcaaa
aagatatttgcacagagaaagacagaaattgagcatgctgagccaatcaaatccagtatt
cgcatcaggcaagtaacaccatagacattgtagaaagtagaatttacgagtcaaacaaac
aacatgcaacatttagaagcatatttccatgagttaaacagctgtgcgntgtgtgtcagg
aacagaaggtcagcccagggagaccggctgtcggctattaccatggctcttcagtatgat
agtgatgacgatggcattctggctgggtctgtccactatgacgagggggagtcggaggca
gagagcatgcaccacagcatggacatgagtaaccccatcttccagctgtacgaggctgtg
cggggcggcaggaacagccagggccagctcatctctgagcccttcctccagctgccctcc
aggaaggactacccagactactaccagcagatcagccagcccatctccctgcaccagatt
aggaacaagatgaagaacaatgagtatgagagtgttgatcagctagacgcagacctcact
ctgatgtttgagaacgccaagcgctacaatgtgcctcactcctctatctataagcgtgtg
ctgaaactccagcacattcagcagctgaagagaacggagctattgaggagggaggacgac
agcatggacggggacagcatgctctcttctaccatgtctgatactggcagcactaagagg
aagagccataagaagaacaccaagaagaaccggatgaaggccctgtactccgcagtgacg
gaggcccgggagatgggcactggccggaggctctgtgagctcttcatgatcaagccctcc
aagaaggactacccggactactacaagatcatcttggagcccgtggacctgaggatcatc
gaccacaacatccgctctgagaagtacatgacggaggacgctctgctggaggacatgaag
ctcatgttccgcaacgcacgccactacaacgaggagggctcacaggtatataacgatgcc
aacgtcctggagaaagtcataaaagacaaacggagggatctcggcccaacgcctgacgat
gatgacatgtcaccaaagttgaaaataaggaagagtggcatcacccctaagaagtccaag
tacctgacccccctgcagcagaagctgaacgagctgtacgaggcggtgaagaacttcaca
gacaagcgtggccgccgcctcagcaccatcttcctgcggctgccgtcgcgcgccgaactg
cccaactactacatcgccatcaagaagcctgtggacatggaaaaagtcaggagccacatg
ctggccaacaagtaccaggatgtggacgcgctagtggaggacctggtgctgatgttcaac
aacgcctgcacctacaatgagcctgagtctctgatctaccgcgacgctctggtgctgcac
cgtgttctgctggagacccgccgggacctggagggaggcgaggatgcccatgtgcccgac
gtggcccgcctcatccaggagctcatccgcagcctcttcgtctccgtgctgggtcaccag
gacgacgaaggccgttgctacagcgactcgctggctgagatccctgctactgaccccagc
agccccgacagaccattgctcaactttgagataatcaggacaaacgtggaccggggacgc
tacaagagactggacgtgttccaggatcacatgtttgaggtgctggagaaggccaggcgc
atgcacaggacggactctgagatctttgaggatgcggtggagctgcagcagttcttcatc
cggatccgagatgaactgtgtaagaatggagagatcctgctcacccccgctctcagctac
acctccaaacacctgcacagcgacgtggagaaggagaagaaggagaagctgcccaaggag
atagaggaggacaagctcaagagggaagaggagaaaaaagaagctgagaagagtgaggac
cctgccggaggggcgtggcagtctggtctccagcgtacctacagccaggactgcagcttc
aaagacagcatgtaccacgtgggagactatgtgtacgtggagcctgctgagcccaacctg
cagccgcatatcgtctgcattgagcgcctgtggcaggatgatgcaggtgagaagtggctg
tatggctgctggttctacaggccaaatgaaaccttccatctcgctacacgcaagttcctg
gagaaggaggtcttcaagagtgactacttcaacaagattcctgtcagcaagatactgggc
aaatgtgttgtcatgtttgtcaaggactactttaagcttcacccagagggcttcagggca
gacgatgtgtatgtctgtgagtctcgctactcagccaagaccaagtccttcaagaagatc
aagatgtggaccatgcctctgagctctgttaggtttgtccctcggggcgtaccgttgcct
gtagtccgtgttgcatccatgtttgcccctaagcaagaagaagagaagccagcagagata
caagaagagggcaaagccttggacactatggataaggagagggaggatgtaaccctggac
atgaccaatggggagccaggctgccagtactatgagcagctctgttacaatgacacctgg
ctgaaagtgggagactgcatctatattcgctcacatggactagtgcgccaccgagtgggc
aggattgagaagatgtggatgcgggacggagcggcctacttctttgggccgatcttcatc
cacccagaggagacagaacacgagcccaccaggatgttctacaagaaggaagtgttcctt
agcaacctggaggagtcttgccccatgacctgtatcatagggaagtgtgcagtgtcctcc
ttcaaagagtacctttcgtgccggcccactgaagtgcctgaggaggatgttctgctgtgt
gagagtcgctacatcgagagtgagaaacagatgaagaagttcaagggcctgaagcgcttc
tccctctctgggaaggtggtggaggacgagatctattacttcaggaagctgatcgtgcct
cagaaggagccatcccctctgctggacagaaagatcgcagtgctggaggctaagtttgcc
gacatgacagacgaggagttggaggacctgggggaggatgatggggagctgggagacacc
tccataccccagctccagagccccatggcaggcatcgacatggacatgccttacacccct
ccacaggtcagagcagcaacatacactgggcaaatgtgtggtcatgttgtgaagtccact
cccaagtccatgaaggggatatccaagaaggagggctccaagaggaagatcaacatgagt
ggctacatcctgttcagcagtgagatgcgtgcggtcatcaaggcccagcacccagacttc
tccttcggggagctcagccgtctggtgggcaccgagtggaggaacctggagtctcccaag
aaagcggagtatgaggagcgagcagctaaagtggccgagcagcaggagcgggagagggcg
gcccagcagctggctttccctagagcaggcatgatgggtacatatatgccacacatgatg
ctgcaggacctagttgacggcatgtttagtatgactggcatgccaccacatcacatgagg
ttgcctctcttgccccatcatcacctgatgccaggcatccctgggttccctggcatgcca
tacccgggtgtcaacacgggtgctcctggagcctatggaacccagatgattggtcttggg
cagcaggccccgccaccctatccaggacagggccagcctgccctccagcagccctcaaca
cccatatttgtagccccgccacccaagcccaagcgcctgctccactcggaggcgtacctg
aagtacattgagggactcaatgcagagtcctccaccatcagcaagtgggaccaaactctc
tcagctcgaaagaaagatgtgcggctgaccaaagagcaggagagccggctgccgtcccat
tggctgaagagcaagggcgcccattccacaatggcggacgcactgtggcgtctgcgagac
ctgatgctgcgcgacacactgaacatccgccagacgtacaacctgtag
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