Coregonus clupeaformis (lake whitefish): 121575308
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Entry
121575308 CDS
T08357
Symbol
ap5b1
Name
(RefSeq) AP-5 complex subunit beta-1
KO
K19022
AP-5 complex subunit beta-1
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cclu03400
]
121575308 (ap5b1)
DNA repair and recombination proteins [BR:
cclu03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AP-5 complex
121575308 (ap5b1)
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GFIT
Motif
Pfam:
AP5B1_middle
AP5B1_barrel
AP5B1_C
AP5B1_N
DIMCO_N
DUF190
Motif
Other DBs
NCBI-GeneID:
121575308
NCBI-ProteinID:
XP_041744238
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All DBs
Position
10:19959232..19963026
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AA seq
973 aa
AA seq
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MFGSIMSANWPERISAFSRSPSQFLCSTTSDIFLAEVLRELRDDRASDHIKVLLLSPLLE
HPTLLCPSVSVGEETALELMSVFAQCSPKSLPLRRHLLLALTSVLLCSCCVSSHTSNSQD
FLELLLQTAQDTNDAQAGAALRPLRATACDCLRELEACLPGLLSQRLELLSSLRQQENSG
LHQAYTGLHALALRNAVYLLTQQKGAGAGDLKAALGSNEGFVWGEGADSAHLDSESHSDL
AIFSPLTLGPMGKVPSLQTGLDCKELRSLLSSLLEESYLLTSLSQAALLQGLVEVLAMVP
AVSPTIFRAQLLRLLGTCKVCLVHTTLLMKAAFTDSLFSAEDEAFLLKRLVGLSQHPLLS
TPEKLFYMDCILHFPENRPISCGDGDESLPVLLTPRLAAALVPTVFNDSVSMLARLNLLS
LVYLEEGEEDGEGQGGRGLAYLYDHLTSLLRIVENQGSREMVVTFFRAAFLFLLHFCHVE
RYSEDLSQRLCDLYLRHTRLAPHLINLADRTQDRLEESGWAVALLKALQRTITEAPLSQL
TLQDLRWHLRILARVAEEGEVLQRATLNFLLCVITSSSSALCVSGDWRLGNGVLGVCRRL
LLHPSLDSLLTPLADLLQHLTCHYGETDIQDHARLYYTLLTTLSREKLAGVLAQRGAERG
RQAKVRSMSAIMAETEELTSGLTVHQTERPLLRLVKLEKHEPDDCKPEHKPESESACESE
SSPGQGGIEREDYRAQFQSPSFASEITLQYHLTHTGVHDPRFDKLFSIRLHFDLTDGHYE
EVSDISVPCLFRTRKPPTVRLRLKPKQPYHTTLRASAIFTTEDGVSWHSQLADLHVAFPE
VFLPFLAPLGWTREQKQRVFEGIWGEICSEESEGDLTNAATSLFCDQLEDSAMGELVEKH
FQRYLVSDLDKGRCKVLFFLPPQSHVLLKIITEEDAVQVHIATDNWKLLPYINSYLEDIT
KEIHSTQQVNGDV
NT seq
2922 nt
NT seq
+upstream
nt +downstream
nt
atgttcggttcaatcatgtcagcgaactggcccgagaggatctccgcattctcgcgcagc
ccgtcccagttcttgtgcagcacgacatcggacatcttcctcgcggaggtcctgcgcgag
ctgcgagatgacagggccagtgaccacatcaaggtcttgctgttgtccccgctacttgag
caccctactctgctgtgcccctctgtctctgtgggtgaggagaccgccctggagctcatg
tctgtgtttgcccagtgctcccccaaatccctcccgctccgtcgccacctcctcctggcc
ctcacctccgtgctcctctgctcctgctgtgttagctcacacaccagtaactcccaagac
ttcctggaactcctcttacagacggcccaggacaccaacgacgcacaggctggggctgca
ttacgccccctgagggcaacagcctgcgactgcctgagggagctggaggcttgcctcccg
ggcctactatcccaacgcttggagctcctgagcagcctgaggcagcaggaaaattccggg
cttcaccaggcttacacggggctccatgccctggcactgaggaatgctgtgtatctgctc
acccagcagaaaggggctggggctggagacctgaaggctgcactggggagcaacgagggg
tttgtgtggggggagggtgcagactcagcacacctggactcagagtcacactctgacttg
gccatcttctcgcccctcactctaggccccatgggaaaagttccttccctgcagacgggc
ctagactgtaaagagctgagatcgctcctctcctccctcctagaggagtcctacctgctc
acatccctatcccaggctgcactgctgcaagggctggtggaggtgcttgccatggtgccc
gcagtctccccaacgatattcagggcacagctgctgcgtctattgggcacatgcaaggtg
tgtctggtgcacaccactctgctgatgaaggctgctttcacagacagcctgttcagcgca
gaggatgaggcctttcttctaaagcgtctcgtcggcctgtcccaacaccccctactgagc
acgcccgagaagctcttctacatggactgcatcctgcacttcccagagaaccgaccaatc
agctgtggcgacggggacgagagcctgcccgtgctcttgacccctcggctggccgcggcc
ctagtgcccactgtgttcaatgatagtgtcagcatgctggctagactcaacctactctct
ctggtctacctggaggaaggagaagaagatggggagggacagggggggagaggcctggcc
tacctgtacgatcacctgacctcccttctccgtatcgtggagaaccagggcagtagggag
atggtggtgaccttcttcagggctgccttcctcttccttctccacttctgccacgtggag
cgctactctgaggacctgtctcagaggctgtgtgacctgtacttgagacacactcggctg
gcgcctcacctcatcaacctggctgaccggacccaggaccggctggaggagtcaggctgg
gctgtggcactgcttaaagccctgcaaagaaccatcacagaggccccactgtcccagctc
accctgcaagacctccgctggcacctcaggatcctggcccgcgtggcagaggaaggggaa
gtcctccagagggccactctcaactttctgctgtgcgtcatcacttcctcttcatccgcg
ctgtgtgtgagcggggactggcgtctggggaacggcgtgctgggggtgtgtcgacgcctg
ctcctgcaccccagcttggactccctcctcacaccgctggctgacctcctacagcacctc
acctgtcattatggtgaaacagacatccaggaccacgcccgcttgtactacaccctcctc
acaactctctcccgggagaagctggctggggtgttggcacagaggggagcagaaaggggg
cggcaagccaaagtgcgctccatgtctgccatcatggccgagaccgaggagttgaccagc
ggactgaccgtgcaccagacagagcgaccgctgctgaggctggtcaaactggagaaacat
gaaccagatgactgcaaaccagagcataaaccagagagtgaatcagcctgtgagtctgag
agctccccaggacagggcgggatagagagagaggactacagagcccagttccagagcccc
agcttcgcctctgaaatcaccctccaataccacctcacacacactggagttcatgacccc
cgttttgacaagctcttcagcatccgcttgcactttgacctcacggacggccactatgag
gaagtgagtgacatcagcgtgccttgcctgttcaggaccaggaagccccctacagtgagg
ctgaggctgaagcccaagcagccgtaccacaccaccctgagagctagcgctatctttacc
acggaggacggcgtctcctggcactcccagctagcagacctccatgtggctttccctgag
gtgtttctgcccttcctcgcacccctagggtggaccagggaacagaagcagagagtgttt
gaggggatctggggcgaaatatgctcagaggagtctgagggtgatttgaccaacgctgcc
actagcctgttctgtgatcagttggaggattcggctatgggtgagctggtggagaagcac
tttcagagatatctggtctcagacttggataaaggcaggtgtaaagtgctgttcttcctc
ccaccccagtctcacgtgctgctgaagatcatcacagaggaggatgccgtccaggttcat
attgctacagacaactggaagcttctgccttatattaactcttatctagaggacattacc
aaagagattcacagcacacagcaagtcaatggtgatgtctga
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