Coregonus clupeaformis (lake whitefish): 121575334
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Entry
121575334 CDS
T08357
Name
(RefSeq) nucleolar RNA helicase 2-like
KO
K16911
ATP-dependent RNA helicase DDX21 [EC:
5.6.2.7
]
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
cclu03009
]
121575334
03036 Chromosome and associated proteins [BR:
cclu03036
]
121575334
Enzymes [BR:
cclu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
121575334
Ribosome biogenesis [BR:
cclu03009
]
Eukaryotic type
Pre-60S particles
Helicases
121575334
Chromosome and associated proteins [BR:
cclu03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
121575334
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
GUCT
Helicase_C
ResIII
CMS1
Gly_acyl_tr_C
ERCC3_RAD25_C
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
121575334
NCBI-ProteinID:
XP_041744272
LinkDB
All DBs
Position
1:83500590..83515577
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AA seq
754 aa
AA seq
DB search
MPSKIIFETEDIGMEGELDISAGSTTPKKVKEKKTKEGKKIKKQKTVIEEEPDCEPPAPK
KKKKKEKVGKANEDVNKSIDVNGNVESPLKNNASHSNEESADNDKATEKKKKKKKTSEEV
VNGVLPETTKLIAQTNGHSTATTPAQSSKDSGSDGEKETETPEQKEGAFSNFRISPNTIK
LLQARGISYLFDIQTQTFNSVYEGKDVIGQARTGTGKTLAFAIPLIEKIQNDPDDKRRGR
APKVLCLAPTRELAIQVSKDFKDMTKKLSVTCFYGGSSYNPQLDAIRSGIDVLVGTPGRI
KDHLQNNKLDLSQLKHVVLDEVDQMLDMGFAEQVEEILSASYQKDSESNPQTLLFSATCP
PWVYVVAKKYMRPTYEHVDLIGKKTQKAATTVEHLAIACHWSQRAAVIGDVVQVYSGSHG
RTIVFCETKKDANELSMNASIKQSSQSLHGDIPQKQREITLKGFRSGTFEVLVATNVAAR
GLDIPEVDLVVQCSPPKDVESYIHRSGRTGRAGRTGVCICFYQRKEEDQLRYVEQKAGIT
FKRVGVPTANDIIKSSSKDAVRFLDSVPPQAIEYFRVSATKLIEERGAVDALAAALAHIS
GATALEQRSLLNSDAGYTTMTMNCSQELQNIGCAWRGLKEQLGEEIDNMIRGMTFLKGKM
GVCFDVPADKVKEYQDAWQDGRRWQLSIATELPELEEKQRMGGDRGDRGYGRSFGGSGGG
GRGGGRGFRNGGGGGNWRGGGGSHKRSFSSAFDY
NT seq
2265 nt
NT seq
+upstream
nt +downstream
nt
atgccatcaaagattatttttgaaaccgaagacatcgggatggaaggtgaactggacatt
agtgcgggcagtacgacacccaaaaaagtaaaggagaagaagaccaaggagggaaagaaa
atcaagaaacagaaaacggttattgaagaggagcctgactgtgaacctcctgctcccaag
aagaagaagaagaaagaaaaagtgggcaaagcaaacgaggacgtgaacaaatccattgat
gttaatggaaatgttgaatcacctttgaagaacaacgcatctcattccaatgaggagtct
gcagacaatgacaaagcaactgagaagaagaagaagaagaaaaagacgtcagaagaagta
gtcaacggagtgttgcctgagactaccaagctgatcgcacaaactaatggacattccaca
gcgacaactccagcacaatcaagcaaagactccggcagtgacggtgaaaaagaaaccgag
acaccagaacaaaaagagggagccttttcaaacttcagaatctcccccaacaccatcaaa
ctacttcaagcacgaggcatatcttacctctttgacatccaaacccaaaccttcaattca
gtgtatgagggaaaggatgtaattggtcaggcaagaacaggcactggcaaaacattagct
tttgccattccgctgatcgagaaaatccaaaatgacccggatgacaagaggaggggcaga
gccccaaaggttctgtgccttgctccaacgagagaattggctattcaagtatccaaggat
ttcaaggacatgacaaagaaactgtctgttacctgtttctatggtgggagctcctacaac
cctcaacttgatgcaatccgcagtggcatcgatgtcctagtgggaactccaggtcgtatc
aaggaccatctacagaataacaaactggacctgtctcaattgaagcacgttgtattagat
gaagtggaccaaatgcttgatatgggctttgcagaacaggtggaggagatactttctgcg
tcttaccaaaaagactctgagagcaacccccagaccctgctcttctctgccacatgccca
ccatgggtgtatgttgtggcaaagaagtacatgaggccaacctatgagcatgtggacctc
attggcaaaaagacccagaaagctgccaccacagtagagcaccttgccattgcgtgtcac
tggtcccagagggctgcagtcattggggatgtggtccaggtgtacagtggcagccacggc
cgcaccatcgtcttctgtgagaccaagaaggatgccaacgagttgtcaatgaacgcctcc
ataaaacagagttcccagtcacttcatggggatattcctcagaagcagagggagatcaca
ttgaaaggcttcagaagtggcacctttgaggtcttagtggccaccaacgttgctgctcgt
gggttggacatcccagaggtagacctggtcgtgcagtgctcacccccaaaggatgtggag
tcatacattcaccggtcaggtcgcactggtagggctggcaggacaggcgtctgcatctgt
ttctaccaacgcaaagaggaagaccagctccgatacgtagagcagaaagcaggcatcaca
tttaagcgagttggagtgcccactgccaatgacatcatcaaatcctccagtaaagatgca
gtgaggtttttagactctgtgcctccccaagccattgagtacttccgtgtgtctgctacc
aagctgattgaggagcgtggagccgtggatgccctggctgccgccctggcacacatatca
ggtgccactgcactggagcagaggtccctcctcaactctgacgctggctacaccacaatg
acaatgaactgctcccaggagctgcaaaacattggctgtgcttggcgtggtctaaaggag
caactgggagaggagattgacaacatgatccgggggatgaccttcctcaagggaaaaatg
ggagtctgttttgatgttccggctgacaaagtaaaggagtaccaagatgcgtggcaggat
ggtagacgttggcagctgtcaatcgccacagagctccctgagctggaggagaaacagcgc
atgggtggtgaccgcggcgaccgtggatacggacgctccttcggtggaagtggcggtgga
ggacggggaggtggccgtggcttcagaaacggtggtggtggtggcaactggagaggaggt
ggaggcagtcataaacgcagcttcagcagtgcatttgattattga
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