Coregonus clupeaformis (lake whitefish): 121575366
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Entry
121575366 CDS
T08357
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 5 isoform X1
KO
K14435
chromodomain-helicase-DNA-binding protein 5 [EC:5.6.2.-]
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
cclu03036
]
121575366
Chromosome and associated proteins [BR:
cclu03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
121575366
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
CHDCT2
CHDII_SANT-like
Helicase_C
CHDNT
DUF1087
PHD
Chromo
HDA2-3
PHD-1st_NSD
ResIII
PHDvar_NSD
HTH_CHD1_Hrp3
DEAD
PHD_2
AAA_22
zf-HC5HC2H_2
Motif
Other DBs
NCBI-GeneID:
121575366
NCBI-ProteinID:
XP_041744347
LinkDB
All DBs
Position
10:22784723..22829273
Genome browser
AA seq
2086 aa
AA seq
DB search
MPGSLSNEDEGQDDMDFEDEIPDPARLDSSLMNFRIGRGPSQAMEGELRTDIEDEEGERN
TVPLTPLDSFFSDDDSLKQQKKKKPKKMEGKMPKVKKRKKEGGGGGGIGVGDNDPEEQAS
ERDDDHPLQRPEIGSESESSTYAPAPTTKKKKKKPKEKKEKKPKRKKREEEEDDDDDDDD
DDDDDENNKEPKSSSQLMQEWGLEDVQYGFTEEDYTTLTNYKAFSQFLRPLIAKKNPKIP
MSKMMTVLGAKWREFSANNPFKGTSATAVAAAVAAAVEMVTVASPISVKEITTLPSSQPG
PIRKAKTKDGKGPGVRRKTKTVKEVKKKSKGKKTKSKKKASSSEEDFGLEESDFDDVSIH
SASVRSDTSVNAKKKARKGRKKRKREDGDGYETDHQDYCEVCQQGGEIILCDTCPKAYHL
VCLDPELEKAPEGKWSCPHCEKEGIQWEAKEDDDDDDDDEEEVAVEEEDDHLEFCRVCKD
GGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCMCPPLKGKVQRILHWTWGDPPLPT
EVPPGPDGEMVDPLVKPPLKGHPERELFVKWAGLSYWHCSWVSELQLELYHAVMYRNYQR
KNDMDEPPPYDYGSGEEELNNEKRKSKDPQYAAMDERFYRYGIKPEWMIIHRILNHSYDK
DGDVHYMIKWRDLPYDQCTWEVDDFDVPDYNNAKHSYWDHREQMIGDDQRPLVVRKGKKG
KEEEKRREREIPPDAPIIDPTIKFEHQPWYINATGGTLHPYQLEGLNWLRFSWAQGTDTI
LADEMGLGKTVQTIVFLYSLYKEGHSKGPYLVSAPLSTIINWEREFEMWAPDFYVVTYTG
DKDSRAVIRENEFTFEDSTVKTGRKVFRMKKGTAIKFHVLLTSYELITIDQTILGSINWA
CLVVDEAHRLKNNQSKFFRILNGYKIYYKLLLTGTPLQNNLEELFHLLNFLTPERFNNLE
GFLEEFADISKEDQIKKLHDLLGPHMLRRLKADVFKNMPSKTELIVRVELSPMQKKYYKF
ILTRNFEALNCKGGGNQVSLLNIMMDLKKCCNHPYLFPVAAMEAPVLPNGSYDGNQLVKS
SGKLTLLQKMLKKLKDEGHRVLIFSQMTKMLDLLEDFLEYEGYKYERIDGGITGGLRQEA
IDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKK
VMIYRFVTRASVEERITQVAKRKMMLTHLVVRPGLGSKTGSMSKQELDDILKFGTEELFK
DEMEAAARAMGSHQKLWDIKDGDEGSVIHYDDNAISKLLDRSQNATEDTEIQNMNEYLSS
FKVAQYVVKDEDAEEEPQREIIKQEENVDPDYWEKLLRHHYEQQQEDLARNLGKGKRIRK
QVNYNDTSQEDQEWQDDLSDNHSEYSVGSEDEDEDFEERPEGGRRHSRRQLKSDRDKPLP
PLLARVGGNIEVLGFNTRQRKAFLNAIMRWGMPPQDAFNSHWLVRDLRGKSEKEFRAYVS
LFMRHLCEPGADGAETFADGVPREGLSRQHVLTRIGVMSLVRKKVQEFEHVNGKYSTPDL
IPLGLELKKLTESLSSDPNTPVLASPAATPQPPGTPVPSEKTDSISGPTEDKETTELEYK
KLPELETHVRTESSSQVQKAPDSDETVKGSTEDKPVSSEESSERTDTPSTLTETSTNPKE
PPSKQTELSSNQSSPKAEPCSETEKSLDKADSDAAPAKPEEKELKPVVSDEPKSEDMPGP
EGRLNGEKEAQEETEDVRREVEKNGFKMRFMFNIADGGFTELHTLWQNEERAAVSSGKMY
DIWHRRHDYWLLAGIVTHGYARWQDIQNDPRYAILNEPFKTEMHKGNYLEMKNKFLARRF
KLLEQALVIEEQLRRAAYLNMTQDPSHPAMALNTRFAEVECLAESHQHLSKESLAGNKPA
NAVLHKGLSSPSVYTAAGLKHCLQTQDLVLNQLEELLSDMKADVTRLPNMLSRIPPVSAR
LQMSERSILSRLTSRGNEPPPQQPFSQGSFACSQMYSTGFGGSFRGPVGGAMVNYSQMPL
GPYVSVSNGPPPPSSHLDKKSCDPLRDVTTPDLKSGKPSDVICIED
NT seq
6261 nt
NT seq
+upstream
nt +downstream
nt
atgcctgggtcgttaagcaatgaagacgagggacaagacgacatggattttgaagacgag
ataccagacccagccaggcttgacagcagtctaatgaacttcaggattggcaggggccct
tcacaagccatggagggagagctgaggaccgacattgaggatgaggagggtgaacgcaac
actgtcccgctcacacctctggacagcttcttctctgatgacgactccctcaaacaacag
aagaagaagaaacctaaaaagatggagggcaagatgcccaaagtcaagaagaggaaaaag
gagggaggaggaggtggaggaataggagttggtgacaatgacccggaggagcaggcctca
gagcgggacgatgaccatccactgcagcgtccagagattggctcagagagcgagagcagc
acctatgcccccgcccccaccacaaagaagaagaagaagaaacctaaggagaagaaagag
aagaaacccaaacggaagaagagagaagaggaggaggatgacgatgatgatgacgatgat
gatgatgatgatgatgaaaataataaggagcccaagtcgtccagccagctgatgcaggag
tggggtctggaagatgtgcagtatggcttcacagaggaggactatacaaccctcaccaac
tacaaggctttcagccagttcctcaggccacttattgccaagaagaaccctaagatcccc
atgtcgaagatgatgacagtgttaggggccaagtggcgcgagttcagcgccaacaacccc
ttcaaaggcacctccgcaaccgctgtggctgccgcggtggctgctgctgtggaaatggtc
actgtggcctcgcccatctctgtcaaagagatcactaccctaccaagctctcagcctggg
ccaatcagaaaagccaaaaccaaagatggaaaggggcctggggtaagacggaaaacaaag
actgtaaaggaggtgaagaagaaaagtaaagggaagaagaccaaatcaaagaagaaggca
tcctcgagtgaggaggactttggacttgaggagtcggactttgatgatgtcagcatccac
agtgcctctgtgcgctctgatacctctgtgaatgccaagaagaaagcccggaagggtcgg
aaaaaaaggaaaagagaggatggggatggctatgagacagaccaccaggactactgtgag
gtgtgccagcagggaggggagatcatcctgtgtgacacctgtcccaaagcctaccacctg
gtgtgtctggaccctgagctggagaaggcccccgagggcaagtggagctgcccccactgt
gagaaggagggcatccagtgggaggccaaagaagatgatgatgatgatgatgatgatgag
gaggaggttgcggttgaggaagaggatgaccacctggagttctgcagagtgtgtaaagat
ggaggggagctgctgtgctgtgacacctgcccctcctcctatcatatccactgcctcaac
cctcccctgcctgagatacccaatggggagtggctgtgcccacgctgcatgtgcccacct
ctgaaggggaaggtacagaggattctccactggacttggggggatccccccttacccact
gaggtgccccctggccctgatggagagatggtggacccgctggtcaagccccccctgaag
ggccacccggagagggaactgtttgtcaagtgggctggtctctcctactggcactgctcc
tgggtcagcgaactacagttagagctttaccacgcagtgatgtaccgtaactaccagcgg
aagaacgacatggacgagccccctccgtacgactacggctctggggaggaggagctgaac
aatgagaagaggaagagtaaagatccgcagtacgctgccatggacgagagattctaccgc
tacggcatcaagccagagtggatgatcatccacaggatcctcaatcacagttatgataag
gatggagatgtgcactacatgatcaagtggagagacttgccctatgaccagtgcacctgg
gaggtggatgactttgacgtccctgattataacaacgccaagcactcctactgggaccac
agggagcagatgattggtgacgaccagcggcccttagtggtgagaaagggaaagaagggc
aaagaggaggagaagaggagggagagagaaatcccccctgacgccccaattatagatcct
accatcaagtttgaacatcaaccctggtacatcaatgccactgggggcaccctgcacccg
taccagctggagggtctgaactggctacggttctcatgggcacagggcacagacactatc
ctggcagacgagatgggcctgggcaagactgtccagaccatcgtgttcctctactcactc
tacaaggagggtcactccaaagggccatacctggtcagtgctcccctgtccaccatcatc
aactgggagagggagtttgagatgtgggccccagacttctacgtggtcacttacactggg
gacaaagacagccgggcggtcatcagggagaacgagttcacctttgaggacagtacagtc
aagacaggccgcaaggtcttccgtatgaagaaaggcactgccatcaagttccatgttttg
ctgacgtcatatgagctgattaccattgatcagaccattctgggctccattaactgggcc
tgtctagtggtggatgaggcccacagactgaagaacaaccagtcaaagtttttcagaatc
ctcaacgggtataagatctactataagctgctactgactggcactcctctgcagaacaac
ctggaggagctgtttcacctgctcaacttcctcaccccagagagatttaataacctggag
ggttttctggaggagtttgcagacatctccaaggaggaccagatcaagaagctgcatgac
ctgctgggcccacacatgctcaggagactgaaggctgatgtcttcaagaacatgccttcc
aagaccgagctcattgtacgagtggagctcagccccatgcagaagaagtactataagttc
atactgacgcggaactttgaggcgctcaactgcaagggcgggggcaaccaggtgtccctg
ctcaacatcatgatggacctgaagaagtgctgcaaccatccctatctgttccccgtggca
gccatggaggcaccagtgttacccaatggctcttatgatgggaaccagctggtcaagtcc
tcaggcaaactcaccctgctccagaagatgctgaagaaactcaaagatgaaggacacaga
gttctcatcttctcccagatgactaagatgctggatctgcttgaggactttctggaatac
gagggctacaaatacgaacgcatcgatggaggcatcactggggggctacgacaggaggct
atcgaccgcttcaatgcaccgggcgctcagcagttctgcttcctgctctccacccgagct
ggaggcctgggcatcaacctagccacggcagacaccgtcatcatctacgactcagactgg
aaccctcacaacgatatccaggcgttcagcagggcccaccgtataggtcagaacaagaag
gtgatgatctatcgctttgtgacgcgggccagcgtggaggagcgcatcacccaggtggcc
aagaggaagatgatgttgacccacttagtggtgaggcccggcctgggctccaagaccggc
tccatgtccaaacaggagctggacgacatcctcaaatttggcactgaggaactcttcaag
gacgagatggaggcggccgctcgggccatgggttcccaccagaaactgtgggacataaag
gatggagatgaaggtagtgtgatccactatgatgacaatgccatctccaagctgctggac
cgtagccagaatgctacggaggacactgagatccagaacatgaacgaatacctcagctcc
ttcaaagtggcccagtacgtggtcaaagacgaggacgcagaggaggagccccagcgcgag
atcattaagcaggaggagaatgtggatccagattactgggagaagctgctgaggcaccac
tatgagcagcagcaggaggatctggcccgcaacctgggcaaaggcaaacgcatccgcaag
caggtcaactacaacgacacgtctcaggaggaccaagagtggcaggatgatctttcagac
aatcattccgagtactccgtggggtccgaggacgaggacgaagatttcgaggagaggccg
gaaggtgggcgcaggcactctcgcagacagctgaagagtgacagggacaaacctctgcca
cccctgctggcacgcgtagggggcaacatcgaggtgctggggttcaacacccgtcaacgg
aaggccttcctcaacgccatcatgcggtggggcatgcctcctcaggacgctttcaactct
cactggctggtcagagacctgagagggaagagtgagaaagagttcagggcctatgtgtcc
ctgttcatgagacatctttgtgagccgggggcagacggggcggagacctttgcagacggg
gttccgcgagaggggctgtcccgccaacatgtcctcaccaggatcggggttatgtctctg
gttaggaaaaaggtccaggagtttgagcatgtcaatggaaagtacagcactccagacttg
atcccacttggactggagttgaagaaactgaccgagagtctgtcatctgaccccaacacc
cctgtccttgccagccctgcagccacaccccagcctcctggcactcctgtcccatcagag
aagacggactcaatctcagggcctactgaagacaaggagaccacagaactagagtacaag
aagctaccagaactggagactcatgtaagaacagagtcatcttcccaggtacagaaggct
cctgacagtgatgagacagtgaagggcagcacagaggacaaaccagtctcctcagaggag
agtagtgaaaggacagacacaccctccacacttacagagacatccaccaatcctaaagag
cctccatccaaacagacagagctgtcgtccaatcaaagctcaccaaaagcggagccttgt
agcgagacagagaagtccttagataaagcagacagtgatgctgccccagccaaacctgag
gagaaggaactgaagccagttgtttcagatgagcccaagagcgaggacatgccaggtcca
gagggccggctgaatggtgagaaagaagcacaggaggagacggaggacgtcaggagggag
gtggagaagaacggcttcaaaatgaggttcatgttcaacattgccgacggaggcttcaca
gagctacacaccctgtggcagaacgaggagcgggccgctgtgtcatctgggaagatgtat
gacatctggcaccgtcgccacgactactggctgctggctggcatcgtaacacatggctat
gcccgctggcaggacattcagaatgacccacgttatgccatcctcaatgagcccttcaag
actgagatgcacaaggggaactatctggagatgaagaacaagttcctggctcgccgcttt
aagctgttggagcaggctctggtgatagaggagcagttaaggagggcagcgtacctgaat
atgacccaggaccccagccacccggccatggccctgaatacccgctttgctgaggtggag
tgtctggctgagtctcaccagcacctgtccaaggagtctctggccgggaacaagccagcc
aacgctgtgctgcacaaaggtctgtcatctcccagtgtgtacacagcagcaggactaaaa
cactgtctacaaactcaagatctggtactgaaccagctggaggagctgctgagtgatatg
aaggcggatgtgacgcgacttcccaacatgttgtcccggatccccccggtgtctgcccga
ctgcagatgtctgagaggagcatcctcagccgcctcaccagccgcggcaacgaacctccg
ccccaacagccgttcagccagggctcatttgcctgttcccagatgtacagcactggtttt
gggggcagcttccgggggcctgtgggaggagccatggtcaactacagccagatgcccctg
ggaccctacgtcagtgtgtccaacggccccccacccccgtccagccacctggacaagaag
tcctgcgacccgctgagggacgtcaccacccctgatctcaagtcaggcaagcccagtgat
gtcatctgtattgaagattag
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integrated database retrieval system
