Coregonus clupeaformis (lake whitefish): 121575387
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Entry
121575387 CDS
T08357
Name
(RefSeq) cleavage stimulation factor subunit 1
KO
K14406
cleavage stimulation factor subunit 1
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
121575387
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cclu03019
]
121575387
Messenger RNA biogenesis [BR:
cclu03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
121575387
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
WDR55
Beta-prop_EML_2
Beta-prop_TEP1_2nd
WD40_WDHD1_1st
CSTF1_dimer
Beta-prop_CAF1B_HIR1
EIF3I
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
WD40_MABP1-WDR62_2nd
ANAPC4_WD40
Beta-prop_WDR75_1st
Beta-prop_RIG_2nd
NBCH_WD40
Beta-prop_EIPR1
Beta-prop_TEP1_C
WDR90_beta-prop_4th
Beta-prop_IFT122_1st
WD40_RFWD3
Beta-prop_SCAP
Beta-prop_DCAF4
Beta-prop_IFT140_1st
Beta-prop_NUP159_NUP214
Ge1_WD40
Beta-prop_NWD2_C
Beta-prop_DCAF12
Beta-prop_WDR19_1st
Beta-prop_SPT8
VPS8_N
Beta-prop_VPS8
Frtz
Motif
Other DBs
NCBI-GeneID:
121575387
NCBI-ProteinID:
XP_045075466
LinkDB
All DBs
Position
Unknown
AA seq
431 aa
AA seq
DB search
MYRPKPTLRDRQHLYRLIISQLLYDGYTNIANNLITEVKPQSVVSPSENLMQLAKIGMEN
DDSAVQYAIGRSDTVAPGVGIDLEFDADVQSMSPEASEYETCYVTSHKGPCRVATYSRDG
QLIATGSADASIKVLDTERMLAKSAMPIEVMMNETAQQNMENHPVIRTLYDHVDEVTCLA
FHPTEQILASGSRDYTLKLFDYSKPSAKRAFKHVQEAEMLRAISFHPSGDFLLVGTQHPT
LRLYDVNTFQCFVSCNPLDQHTDTISGVSYNPNANSYVSCSKDGSIKLWDGVSNRCVMTF
DKAHDGAEVCSAVFSKNSKYVLSTGKDSVAKLWEISTGRPLVKYTGAGLSGRQMHRTQGV
FNHTEDYVLLPDERTISLCCWDSRSAERKNLLSLGHNNIVRCIVHSPTNPGFMTCSDDFR
ARFWYRRTTTD
NT seq
1296 nt
NT seq
+upstream
nt +downstream
nt
atgtatcgtcccaaaccgacgctgcgggaccggcagcacctgtaccggctgatcatcagc
cagttgctgtacgacggttacaccaacatcgccaacaacctcatcacagaggtgaagcca
cagagcgtcgtgtcgccctcggagaacctcatgcagctggccaagataggcatggagaat
gatgacagcgcggtgcagtatgccattgggcgttcggacacagtggccccaggtgttggc
atcgacctggagtttgacgctgacgtccagtccatgtcccccgaggcgtctgagtacgag
acttgttacgtgacgtctcataagggtccctgtcgcgtggccacctatagccgggacggg
cagctcatcgctacgggctctgcagacgcctccatcaaagtcctggacacagaacgcatg
ctggccaagagcgccatgcccatagaggtgatgatgaatgagacggcccagcagaacatg
gagaaccaccctgtgatcagaacactgtacgaccacgttgatgaggtcacgtgtctggcg
ttccaccccacggaacagatcctggcgtctggatcacgtgactacaccctcaaactgttc
gactactccaagccctctgccaagagggcctttaaacatgtacaggaagcggagatgcta
cgggccatctccttccatccgtcaggcgacttcctgttggtggggacgcagcacccgacc
ctccgcctctacgacgtcaacaccttccaatgcttcgtctcctgcaaccctctagaccaa
cacactgacaccatcagtggagttagctacaaccctaatgctaacagctacgtgtcgtgc
agtaaggacggcagtatcaagctgtgggacggcgtgtctaaccgctgtgtgatgacgttt
gataaggctcatgacggggcggaggtctgctccgctgtcttctctaagaactccaagtac
gtcctctccaccgggaaagactctgtcgccaaactctgggagatctccaccgggcgcccc
ctcgtcaaatacacaggtgctggtctgagtggtcgtcagatgcatcgtacccagggtgtc
ttcaaccacacagaggactatgttctgttgcctgatgagaggaccatctctctgtgctgc
tgggactctcggtctgcagagaggaagaaccttctgtccctgggtcacaacaacattgtc
cgctgtatcgtccactcccccaccaacccagggttcatgacctgtagcgatgacttcagg
gcccgcttctggtacagacgtactaccaccgactga
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