Coregonus clupeaformis (lake whitefish): 121575422
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Entry
121575422 CDS
T08357
Name
(RefSeq) dihydropyridine-sensitive L-type skeletal muscle calcium channel subunit alpha-1-like
KO
K04857
voltage-dependent calcium channel L type alpha-1S
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04010
MAPK signaling pathway
cclu04020
Calcium signaling pathway
cclu04260
Cardiac muscle contraction
cclu04261
Adrenergic signaling in cardiomyocytes
cclu04270
Vascular smooth muscle contraction
cclu04912
GnRH signaling pathway
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
121575422
04020 Calcium signaling pathway
121575422
09150 Organismal Systems
09152 Endocrine system
04912 GnRH signaling pathway
121575422
09153 Circulatory system
04260 Cardiac muscle contraction
121575422
04261 Adrenergic signaling in cardiomyocytes
121575422
04270 Vascular smooth muscle contraction
121575422
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
cclu04040
]
121575422
Ion channels [BR:
cclu04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
121575422
BRITE hierarchy
Motif
Pfam:
Ion_trans
GPHH
Ca_chan_IQ
PKD_channel
CAC1F_C
Motif
Other DBs
NCBI-GeneID:
121575422
NCBI-ProteinID:
XP_041744470
LinkDB
All DBs
Position
10:complement(48058996..48087633)
Genome browser
AA seq
1834 aa
AA seq
DB search
MADSGGEPNLQSYIMDEETLKRKQKEKLKKLLATGGNPRPARSLFFLTLKNPFRKAAINI
VEWKPFEIIILLTIFANCVALAVFLPMPEEDSNNTNSNLESLEYIFLIVFSIECFLKIIA
YGFLFHENAYLRNCWNILDFVCVSVGLFAVIGDFITYISGVEAQPGDKGGGFDMKALRAF
RVLRPLRLVSGVPSLQVVMNSILKSMLPLFHISLLVFFMVTIYAIVGLELFKCKMHKTCY
YTGTNIIATVENEKASPCAQAGNGRRCTINGTECRAGWAGPNNGITHFDNLGFAMLTVYQ
CITTQGWTDVLYWVNDAIGMEWPWMYFLTLILVGSFFVLNLVLGVLSGEFTKEREKGKAR
GEYTEMRETQQLDEDLKGYMEWITQAEVMDANGEGQGLLTLEDGESEAGSLKDMDTMQKI
MYYYKLARKWNIFFRRKCLVYVKSRMFYWWVILLVFLNTLAIATEHHQQSQQLTEWQDTA
NKVLLSLFAIEMFMKMYALGLQQYFMSLFNRFDCFVVSTGILELILVRMDVMTVTGISVL
RCIRLLRLLKVTKYWTSLSNLVVSLLNSTPSIACLLLLLFLFIVIFSLLGMQVFGGKFNF
PNAPKPRSTFDSFPQALISVFQILTGEDWNSVMYDGIMAHGGPTMPGILVSIYFIILFVC
GNYILLNVFLAIAVDNLAEAESLTMAQKEKSEEKKRKKLLRANMPDKATEEKALLAKKLA
AERAKIEGIPTTAKLRVDEFESNVNEIKDPFPPADFPGDDEEEEPDIPDTPRPRPMADLQ
LKEEVVPIPEASSFYIFSSENKLRKLCHRIINATTFTNIILLFILLSSISLAAEDPIDPM
SFRNQVLASADVVFTSVFTVEVVLKMTVYGAIMHPGSFCRNSFNILDLIVVSVSLLSMLM
ESSAISVVKILRVLRVLRPLRAINRAKGLKHVVQCVFVAIKTIGNIVLVTMLLDFMFACI
GVQLFKGKFYACTDPDKMTEEECKGNYIRYQEGAIHPMTIHKREWINAELNFDNILEGML
ALFTVSTFEGWPKLLYKAIDSNMEDMGPVYNNRIAISIFFIVYLILIAFFMMNIFVGFVI
VTFQEQGEQEYKNCELDKNQRACVEYALKARPLRCYIPKNQYQYNVWYIVTSCYFEYLMF
LLIMLNTMCLGMQHCNQSTHVTDLSDMLNVIFTVLFTVEMVLKLMAFKAKGYFGDPWNVF
DFVIVIGSVVDVILSEVDAALASSGGLYCLHGCAEVNPMQAIADSENARVSITFFRLFRV
MRLVKLLNRSEGIRNLLWTFIKSLQALPYVALLILMLFFIYAVVGMQIFGKIALIDGTYI
NRNNNFQTFPHAVLLLFRCATGEAWQEVMLACLYGKRCDPKSDYLPGEEMTCGASFAIIY
FMSFYMLCAFLIINLFVAVIMDNFDYLTRDWSILGPHHLDEFKKIWAEYDPEATGRIKHL
DVVTLLRRIQPPLGFGKFCPHRVACKRLVSMNMPLNSDGTVTFNATLFALVRTALKIKTE
GNFEQANEELRAIIKKIWKRTSMKLLDQVIPPIGDDEVTVGKFYATFLIQDYFRKLKKRQ
EEYYGFRPTKKNATNEIQAGLRSIEEEAAPELQRAISGDLMNEEEMDRAMEDAAEEGIFR
RAGGLFGNHVDSFTMEEGTRNPNATQVTSQRPLQMSRSDDGEATSSPAYNANEDFFSSTP
NKTNNNNVNNNAGESFSYETHDRVQVYTISTSKSSQDRDWQLQTVAGPSQDPETHRELLS
PQKAQAHGPDSAFDTLIQEVLINGGLESLARDPRFVLVTKQEMAEALNFDPVDMESSATE
LMNGRRGRVATPPIRPPRKSQRKANQSTTPKDVV
NT seq
5505 nt
NT seq
+upstream
nt +downstream
nt
atggcggacagtggcggcgagcctaacctgcagtcctacattatggacgaggaaactctg
aagaggaagcagaaggagaagctgaagaagctcctggccacagggggaaaccctcggccc
gcacgctccctcttcttcctcacactgaagaaccccttccgcaaggctgccatcaacatt
gtggaatggaaaccgtttgagatcatcatcctgctgaccatctttgccaactgtgtggcc
ctggctgtgtttctgcctatgcctgaggaggacagcaataacaccaacagcaacctggaa
agtctggagtacatcttcctcatcgtcttctccatagagtgctttctaaagataatagcc
tatggatttctatttcacgagaatgcatatctgcggaactgttggaacatactggacttt
gtctgtgtgtctgtggggctgtttgctgtcatcggggacttcatcacctatatcagtggt
gtcgaggctcaaccaggggacaagggaggaggcttcgacatgaaggccctcagggcgttc
agggtgctccggcccctcaggctcgtctctggagtccccagcctgcaggtggtgatgaac
tccatcctgaagtccatgctacctctgttccacatctccctgctggtcttcttcatggtc
accatctacgccatcgtgggactggagctgttcaagtgcaagatgcacaaaacctgctac
tacacaggcacaaatatcatagccacagtggagaatgagaaggcatctccatgtgctcag
gctggtaatggtcggcgctgcaccatcaatgggacagagtgtagggcaggctgggccgga
cccaacaacggcatcacacactttgacaacctgggcttcgctatgctcactgtctaccag
tgcatcactacccagggctggaccgacgtgctctactgggtgaatgatgccataggtatg
gagtggccgtggatgtactttctgacgctcatcttggttggctctttcttcgtactcaac
ctggttctgggtgtgctcagtggtgaattcactaaggagcgagagaagggtaaggcgcgt
ggagagtacacagagatgagggagacccagcagctggatgaggatctgaagggctacatg
gagtggatcacacaggccgaagtcatggatgccaatggggagggacagggcctgctaacc
ctggaggatggagaatccgaggcagggagcctaaaggacatggacaccatgcaaaaaatc
atgtactactacaagctggcgcgtaaatggaacattttcttccggcgtaagtgtcttgtt
tatgtgaagtcccgaatgttctactggtgggtgatccttctggtgtttctgaacacgctg
gccatcgctactgaacaccaccagcagtcccagcaactcaccgagtggcaagacactgcc
aacaaggtgttgctgtctctgtttgccattgagatgtttatgaagatgtacgccctgggt
ctccagcaatacttcatgtctctgttcaaccgcttcgactgcttcgtggtctccaccggc
attctggaactcatcctggtccgcatggacgtcatgaccgtcacgggcatctcggtgctg
cgctgcattcgactacttaggctgctcaaagtaaccaagtactggacgtctctcagtaat
ctggtggtgtccctgctgaactcgaccccctccatcgcctgcctgctgctcctcctcttc
ctcttcatcgtcatcttctccctgctgggcatgcaggtgttcggaggcaagttcaacttc
cccaatgcgcccaaaccccgcagcacattcgacagcttcccccaagctctcatcagtgtc
ttccagatcctgacaggggaggactggaactctgtgatgtatgacggcatcatggcgcat
ggcggtcccaccatgcccgggatcctcgtcagcatctacttcattatcctcttcgtctgc
ggaaactacatcctgctgaacgtgttcctggccatcgccgtggacaacctggcagaggcc
gagagtctgaccatggcccagaaggagaagtctgaggagaagaaacgcaagaagctgctt
agggctaacatgcctgacaaggccacagaggagaaagccctcctggccaagaagcttgca
gcggagagagccaaaatagagggcatccctaccacagccaagctgagagtggacgagttc
gagtccaacgtgaacgagatcaaggaccccttcccccctgctgacttccctggcgatgat
gaggaggaggagcctgatatccctgacaccccgaggccccgaccaatggcagacctgcag
ctgaaggaggaggtggtgcctattccagaggccagctccttctacatctttagctctgag
aacaagctccgtaagctgtgccaccgcatcatcaacgccaccaccttcaccaatatcatc
ctcctcttcatcctcctcagcagcatctccctggctgccgaggaccccatcgaccccatg
tccttcaggaaccaggtgctggcctccgctgatgttgtcttcacctcagtgttcactgta
gaagttgtcctcaagatgaccgtatacggtgccatcatgcaccccggctccttctgccgg
aactcctttaatatcctggatctgattgtggtcagcgtatccctcctctccatgctcatg
gagtccagtgctatctctgtggtgaagatcctcagggtgttgagggtgctgaggccccta
agggccatcaacagggccaagggcctcaagcatgtggtccagtgtgtttttgtggccatc
aaaaccatcggcaacatcgtgctggttaccatgctgctagacttcatgttcgcctgcatt
ggagtccagctcttcaagggcaaattctacgcctgcacagatcctgacaaaatgacagag
gaggagtgcaagggtaactacattaggtaccaggaaggtgccatccatccgatgaccatc
cataagagagaatggatcaacgcagagctcaactttgacaacatcctcgaaggcatgctg
gctctcttcaccgtctccaccttcgagggctggccaaagttgctctacaaggccatagac
tctaacatggaggacatgggtccagtgtataacaaccgcattgccatctccatcttcttc
atagtctacctcatccttatcgctttcttcatgatgaacatctttgtgggtttcgtcatc
gttacatttcaggagcagggagagcaggagtacaagaactgtgagctggataagaaccag
cgtgcgtgtgtcgagtacgccctgaaagcccggccgctgcgctgctacattcctaagaac
cagtatcagtacaatgtgtggtacatcgtcacttcctgctactttgagtacctcatgttc
ctgctcatcatgctcaacaccatgtgtctggggatgcagcactgtaaccagtcaacccat
gtgaccgacctgtcagacatgctgaacgtgatcttcactgtgctcttcactgtggagatg
gtcctcaaactcatggccttcaaagctaagggttactttggagacccatggaacgtcttt
gactttgtcatcgtcatcggcagcgttgttgacgtcatcctgagtgaagtcgatgcagcc
ctggcctcctctggaggactatactgtctccacggctgcgctgaggtgaacccaatgcaa
gcgatagcggattctgaaaatgcccgtgtgtcaatcaccttcttccgactgttccgtgtg
atgcgtctggtgaaattgctgaaccgttctgaggggatccggaaccttctgtggaccttc
atcaagtccttacaggctctgccctacgtcgccctactcatcctcatgctgttcttcatc
tacgctgtggttgggatgcagatatttggtaagatagcgctgatagacgggacttacatc
aacaggaacaacaacttccagacattcccccatgctgtgctgctgctcttcaggtgtgcg
acaggtgaggcgtggcaggaagtaatgttggcgtgtctgtatgggaagaggtgtgaccct
aagtcagactacctgcctggggaggagatgacctgtggagccagcttcgccatcatctac
ttcatgagcttttacatgctctgtgccttcctgatcatcaacctgtttgtggcggtcatc
atggacaacttcgactatcttacacgtgattggtccattctcggtcctcatcacctggat
gagttcaagaagatctgggcagagtacgacccagaggccacggggcgtattaagcacctg
gacgtggtgactctgctgcgtaggatccagcctcctctgggctttggaaagttctgcccc
catagagtagcctgcaagagactggtgtccatgaacatgccactcaacagtgacggaacg
gtcacctttaacgctacgctgttcgcactggtcaggaccgcactgaagatcaagactgaa
ggcaactttgagcaggccaatgaggagctgagggccatcatcaagaagatctggaaacgt
accagtatgaagctgctggaccaggtcatcccacctatcggagatgatgaggtgaccgtg
gggaagttctacgccaccttcctgatccaggactacttcaggaagttgaagaagagacaa
gaggagtactatggcttccgccccaccaagaagaacgccaccaacgagatacaggcaggt
ctgaggagcattgaggaggaggcggctccagagctgcagagagccatctcaggagacctg
atgaatgaggaggagatggacagagccatggaggacgcagcggaggagggaatcttcagg
cgggcgggcggtctgtttgggaaccacgttgattccttcaccatggaggaaggaacccgt
aaccctaacgctacacaggtgaccagccagcggcccctgcagatgagcaggtcagacgac
ggggaggctaccagctcacctgcctacaatgcaaacgaggacttcttctcctcaacgcct
aacaaaactaacaacaacaatgtcaacaacaacgccggggagagcttttcttatgagaca
catgaccgggttcaggtctataccatctcaaccagcaaaagttcgcaagacagagactgg
cagctgcagacagtagctggacccagccaggaccctgagacccacagagagctcctcagc
ccccagaaagcccaggcccacggcccagacagcgccttcgatacactcatacaggaagtc
ttgataaacggtgggttggagagcttggccagggaccctcgttttgtgttggtgacgaaa
caggaaatggctgaagctttgaactttgaccctgtggatatggagagttctgccactgag
cttatgaatggtcgcagagggagggttgccacacctccaatcaggccccctcgcaaatca
cagagaaaggccaaccaatcaacaacacccaaagatgttgtgtag
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