Coregonus clupeaformis (lake whitefish): 121575423
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Entry
121575423 CDS
T08357
Name
(RefSeq) laminin subunit beta-3 isoform X1
KO
K06244
laminin, beta 3
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04510
Focal adhesion
cclu04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
121575423
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
121575423
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Gene cluster
GFIT
Motif
Pfam:
EGF_laminin
Laminin_N
EGF_LMN_ATRN
LAMB1
KASH_CCD
Laminin_I
GEMI5_RBS
GldM_1st
DUF745
Wbp11
Motif
Other DBs
NCBI-GeneID:
121575423
NCBI-ProteinID:
XP_041744471
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Position
10:complement(48220601..48248986)
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AA seq
1136 aa
AA seq
DB search
MGDLLLGRDRQLHASSTCGLTGSEVFCTYFGQWRMKCCPCDSRNPSSQLAHTIQNVLSTA
GPNRWWQARKDVSQVTLQLDLQNLFQLDTLILTFKGPRASALVVERTLNNGQTWQPSLYM
ASDCRSAFSGVALTTPRSLDQTYCYTLPPIPANTYQDQTIKFSPLHQFSTISVPNGQKIQ
EVSGLTGLRVRLTELGAVPRLPGRAPSLFYALREMRVMGTCLCHGHANRCLPDSTTNQLP
STQVSAQCECQHNTAGMNCERCADLYNDLPWRPAEEGNTHTCKRCECNNHAQQCRFDPAV
YEASGRRSGGVCEGCLHHTTGPKCDRCAPGFQPNHWSSIDRPDACTRCHCSAEGAENGGQ
CDDVTGSCRCKANVDGPRCDRCKMGYYGLTASNLLGCTKCSCSAEGSLSSVCDPVSGQCP
CRPYLQGLTCDLCSHGYWNPSSPRGCVPCRCDPTNSHGDTCDQSTGQCLCRSGFGGRTCT
ECPDNTYGDPLIGCRPCQCAAGAMVPGGCDKNTGTCRCRLGVTGARCDACSRGHCDSFPD
CEVCPSCFFSLDSYIQNLTLGLERLSPRIPSRPGGSLPTGLGPRIQALEATLTQIRDSLP
LPPPSTRQVNDALFQLRRLRDQLDQVDGDLSPQGRGLELGSQLDEFEALLDGLGLLYNTK
RDALRNSINSNNAGAFSSIKNAYDEFTDAAKSVEASGKTVDQSLAVREDALDLQNQVQPA
NTRDLEKLNQQLNTKPDLTPTAKQVCGSVRSAPCNPAWCDGELCPAEGAPPCGHGESCVG
ALPLGTRAVRDAEEVKDRLQLLNGKITQAAAQIQKTQDTVNLVRQSTDDLVNQMRRTRDD
LEADLQETRYFVKELKDFLSDPSSDPTAISTASEWILNAKLPLSLAALKRKLQEIRDLAA
GLPDSTAVLDQAGPQLDTAQRLLQEAQDASDAALGVKADVDGLLEGFTTVEGSLSGLNDK
VQDSLDIVEDISNSLTQTKAQLTPTVKALGEVSALAEGMKPQLEGLKVLVHSGGLLAQNA
KGEADKAKKEADAAARDLASLEKQLEKLRAAERTSGHGDGTGAAGERLQKLQEEAGSLAQ
DTGDMMKSLAGKADSLRRLQDEVLLKSQRLTGLDGKLRDLLADMRQKVKILSTCQG
NT seq
3411 nt
NT seq
+upstream
nt +downstream
nt
atgggagacctgctcctgggtagggaccgtcagctccatgcctcctccacctgcggcctc
accggctctgaggtcttttgcacctactttggacagtggaggatgaagtgctgtccctgt
gactccaggaacccatccagtcagttagctcacaccatccagaacgttctatccaccgct
ggacccaacaggtggtggcaggccaggaaagatgtgagtcaggtcaccctacagttggac
ctacagaacctgtttcagctggacaccctcattctgacattcaagggtcctcgtgccagt
gcgttggtggtggagaggacactgaataatggtcaaacctggcaaccgtctctctacatg
gcctcagactgccgctcggccttctctggtgttgccttgactacaccacgctccctggac
cagacctactgctacacccttccccccatcccggctaacacttaccaggaccagacaatt
aaattcagccccttgcatcagttctctaccatcagcgtccccaatgggcagaagattcaa
gaggtgtcaggattgacaggcctgcgggtgaggttgactgagctgggtgctgtgccccgc
ttgcccggccgcgctccctctctgttctatgccctcagagagatgagagtaatgggcacc
tgcctctgccacggtcatgccaaccgctgtttgccggattctactaccaaccagctacct
agcacacaggtcagtgctcagtgtgagtgccagcacaacacagcaggtatgaactgtgaa
cgatgtgctgatctctacaacgacctgccctggagacctgcagaggagggaaacacacac
acctgcaaacgttgtgagtgtaacaaccatgcacagcagtgccgtttcgacccagctgtg
tatgaggcgagcggacggaggagtgggggtgtgtgtgagggctgtctgcaccacacaacc
gggcccaagtgtgaccgctgtgcccctggattccaacccaaccactggagcagtatagac
cggcctgacgcctgcacacgctgccattgcagtgcagagggggcggagaatgggggtcag
tgtgatgatgtcacagggtcgtgtcgctgtaaggccaacgttgacggaccgagatgtgac
cgctgcaagatgggatactatggcctgaccgcctccaaccttctgggctgcacgaagtgc
tcgtgcagtgcagagggctccctgtccagtgtgtgtgaccctgtgagcggtcagtgtccc
tgtcgaccttacctccaggggctgacctgtgacctctgttcccatggttactggaacccc
tcctccccccgcggctgtgtgccctgtcgctgtgaccccaccaactcccatggtgacacc
tgtgaccagagtacgggtcagtgtctgtgcaggtcagggttcggaggtcgtacctgtaca
gaatgccctgacaacacttatggagaccccctcattggctgcagaccgtgccagtgtgct
gctggggccatggtaccaggaggctgtgataagaatacagggacatgccggtgtcgtctt
ggtgtcacaggtgcccgttgcgatgcctgtagccgtggccactgtgactcctttcctgac
tgtgaggtctgcccctcctgcttcttctctctggactcctacatccagaacctcaccctg
ggcctagagagactctcccccagaatcccctctcgtcctgggggctcgttgcccactggt
ctgggtccccgcatccaagctttggaggccactctcacccagatacgtgactctctccca
ctcccacctccctctaccagacaagtcaacgatgccctctttcagctacgcagactaagg
gaccagttagatcaggtggatggggatctgtcaccccaaggcagaggcctcgagctgggc
tcacagctggacgagtttgaggctctcctggacggcctgggtctgctgtacaacaccaag
agagacgctctcaggaactctatcaactccaacaatgcaggggccttctcttctataaag
aatgcctatgatgagttcacggatgcggccaagagtgtggaggctagtgggaagactgtg
gatcaatctttagcggtcagagaggacgctcttgacctccagaaccaggtccaaccagcc
aacaccagagacctggagaaactcaaccagcagctgaacaccaaacctgacctcacaccc
actgccaagcaggtgtgtggcagtgtgcgctctgccccttgtaaccctgcctggtgtgat
ggtgagctttgccctgcggagggtgcgccaccctgtggtcatggggagagttgcgttggg
gctctgcctctggggacccgagctgtgagggatgctgaggaggtaaaggacagactgcag
ctgctcaatgggaagatcacacaggctgctgcacagatccagaaaacacaggacacagtc
aatctggtcagacagtccacggatgatctggtcaatcagatgaggcggaccagggatgac
ttggaggcagatctgcaggagacaagatactttgttaaagagctgaaggacttcctgtca
gacccgtcgtcagacccaacagccatcagtacggcaagtgagtggatcttgaacgccaag
ctgcctctcagtctggcagctctgaagaggaagcttcaggagatcagagacctggcggca
ggactcccagacagcactgcagtcctggaccaggctggaccacagctcgacaccgcccaa
cgcctgctacaggaggcccaggatgccagcgatgctgcgctgggtgtgaaggctgatgtt
gacgggctgctggagggcttcaccaccgtggagggctccctctctggcctgaacgacaaa
gtgcaggacagcctggacatagtggaagacatcagcaacagtctcacacagaccaaggcc
cagttgactcccacggtgaaggctctaggggaggtgtctgccctggctgaggggatgaag
cctcagctggaggggctcaaggtgctggtgcactctggaggtctgctggcccagaatgct
aagggagaggccgataaggctaagaaggaggcagatgctgcggccagggacctggcatcc
ctggagaagcagctggagaagctgcgtgctgcagagaggaccagtggtcatggcgatggg
acgggggcagcaggtgagcgtctccagaagctgcaggaggaggctggttctctggcccag
gacactggagacatgatgaagtcactagcaggtaaagcagactctctgcgtagactacag
gatgaggtcctactgaagtcccagaggctgaccggtctggacggcaaactgcgggacctc
ctggctgacatgagacagaaggtcaagatcctctccacctgccagggctga
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