KEGG   Coregonus clupeaformis (lake whitefish): 121575442
Entry
121575442         CDS       T08357                                 
Name
(RefSeq) WD repeat-containing protein 82
  KO
K14962  COMPASS component SWD2
Organism
cclu  Coregonus clupeaformis (lake whitefish)
Pathway
cclu03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:cclu00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    121575442
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cclu03019]
    121575442
   03036 Chromosome and associated proteins [BR:cclu03036]
    121575442
Messenger RNA biogenesis [BR:cclu03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     121575442
Chromosome and associated proteins [BR:cclu03036]
 Eukaryotic type
  Histone modification proteins
   HMT complexes
    COMPASS/SET1 complex
     121575442
    COMPASS/SET1 complex (yeast)
     121575442
SSDB
Motif
Pfam: WD40_Prp19 WD40 WD40_WDHD1_1st WD40_CDC20-Fz Beta-prop_EML_2 WDR55 EIF3I Beta-prop_TEP1_2nd Beta-prop_CAF1B_HIR1 ANAPC4_WD40 Beta-prop_WDR90_POC16_2nd Beta-prop_EML WDR90_beta-prop_4th WD40_MABP1-WDR62_2nd Beta-prop_TEP1_C Beta-prop_WDR75_1st Beta-prop_SPT8 Beta-prop_IFT122_1st NBCH_WD40 WD40_MABP1-WDR62_1st Beta-prop_DCAF4 Beta-prop_WDR35_TULP_N VPS8_N Beta-prop_WDR19_1st Beta-prop_HPS5 Beta-prop_IFT140_1st Beta-prop_VPS8 SMN_Tudor
Other DBs
NCBI-GeneID: 121575442
NCBI-ProteinID: XP_041744505
LinkDB
Position
10:complement(48595689..48599202)
AA seq 314 aa
MKITDSVLRSFRVARTFRENSQKVNCVDYSSNGESAISSSDDDSIVLYDCQEGKPIRTLY
SKKYGVDLIRYTHGDANTVVYSSNKLDDTIRYLSLTDNKYIRYFPGHTDRVVALSMSPVD
DTFISGSLDMTIRLWDLRSPNCQGLTNPLGKPVCSFDPEGLIFAAGVDSEAIKLYDLRSF
DKGPFASFETQFSRVCEWTGLKFSRDGKQILISTNGGAIRVLDAFNGSVLHTFSGYNNSK
GISLEACFTPDSDFVMIGSEDGRVHVWSTESGMKIAVLDGKHSGPINTLQFNPKYMTFAS
ACSNMAFWLPCVGD
NT seq 945 nt   +upstreamnt  +downstreamnt
atgaagattacggacagtgtgttgcgaagttttagggttgctaggacattccgggagaat
tcgcagaaagtcaactgtgtggactacagctcgaacggcgagagtgcaatatctagtagc
gacgacgactccattgttttatatgactgtcaggaaggaaaacccatacggaccctgtac
agtaagaagtacggagtagaccttatccggtatacacacggggatgccaacacagtggtc
tacagctccaacaaactagatgataccatccgatacctgtctctcactgacaacaagtac
atccgctacttccctgggcacactgatagggttgttgctctctccatgtcaccggtggat
gacacgttcatctcgggttcattggatatgaccatacgactctgggacctgcgctctcca
aactgtcagggtcttactaatcctttggggaagcctgtttgctcctttgatcccgagggc
ctgatattcgctgctggggtcgactctgaggcgattaaactgtatgacctccgctccttt
gacaagggccccttcgcctcctttgagactcagtttagccgcgtctgtgagtggactgga
ctgaagttcagcagggacgggaagcagattctcatctctaccaacgggggtgctattcgc
gtcctagacgccttcaatggatccgtgctgcacactttctcaggctacaacaacagtaaa
ggcatttcattggaggcctgcttcaccccagactcagactttgttatgattggttcagag
gatgggagggtccatgtgtggagtacagagagtgggatgaagatagcggttctggacggg
aagcattcaggaccaatcaacacactgcagtttaaccctaaatacatgacatttgccagc
gcctgctccaatatggcgttctggcttccctgtgtaggagactga

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