Coregonus clupeaformis (lake whitefish): 121575645
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Entry
121575645 CDS
T08357
Symbol
vps16
Name
(RefSeq) vacuolar protein sorting-associated protein 16 homolog isoform X1
KO
K20180
vacuolar protein sorting-associated protein 16
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04140
Autophagy - animal
cclu04148
Efferocytosis
cclu05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
121575645 (vps16)
04148 Efferocytosis
121575645 (vps16)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
121575645 (vps16)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cclu04131
]
121575645 (vps16)
Membrane trafficking [BR:
cclu04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
121575645 (vps16)
Hops complex
121575645 (vps16)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps16_N
Vps16_C
DUF740
Motif
Other DBs
NCBI-GeneID:
121575645
NCBI-ProteinID:
XP_041744801
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All DBs
Position
35:41644368..41653018
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AA seq
835 aa
AA seq
DB search
MAFITANWNPLGEAFYRKIELYEMGWSLRDGLKECLVAAAPYGGPIALLRQPQRPSSSAR
PLLEIYSSSGANMASFPWKSGPVRQLGWTVCDDLLCIQEDGTVLIYDLFGAFKRHFSMGN
EVVQNHVLEAKVFHSPYGTGVAIVTGASRFTLATNIDDLKLRRLPEVPGLQVAPSCWAVL
TQDRQTKVLLANGADLYILDNTSCTPVTPPGLSPQACSIVNMAVSFSYKYLALFTDSGHL
WMGSANLKDKLSEVDTKVRTPPKQMVWCRRPKSQQPSVVIMWDRLLLVAGECKDTIQYTL
DEESVCIAELDGVRIVGGSRHELLQEVPSACQDIFKIASMAPGALLLEAHKEYEKSSQKA
DEYLREIKEQSVLGEAVRQCVEAAGYEHEPETQKTLLRAASFGKCFLSNYPPEPFVNMCR
DLKVLNSVRDYTVGIPLTHTQYKQMTVQVLIDRLVYRKLYPLAIEICRYLKTPEYQGVSR
VLKHWACCKVQQKEEPDESIARAVSVKLGEAAGISYSEIAARAYECGRTELAIKLLEFEP
RSGEQVPLLLKMKRSQLALSKAIESGDTDLVYTVVTYLKNEMNRGDFFMTLRNQPVALSL
YRQFCKHQEQDTLKDLFNQDDDHQELGNFYVKASYKEKKLEARLSLLQSAVDEYNKAKNE
FGAKATEEEMKLLRFQRRLDEEKGEALLGLSLQETLHALLTSNFHKQAEQLYRDFRVPDK
RYWWLKLTALAEKEDWEEMEKFAKSKKSPIGYLPFVEVCVKRHNKYEAKKYVSKVTPEQK
VKAHLAIGDLEGAAEAAIERRSEGEISTVLSRCSPTTDRALLERLNRARSTAAKK
NT seq
2508 nt
NT seq
+upstream
nt +downstream
nt
atggcatttataacggcaaactggaatccgctcggggaagcgttttacaggaagatcgag
ctgtatgagatgggatggagcttgagagatgggctcaaggaatgcctggtggcagcagcc
ccatacgggggacccatcgctctcctgaggcagccacagaggccttcctccagcgcacgg
cccctgctggagatctactcctcctcgggcgccaacatggccagcttcccgtggaagagt
ggcccagtgagacagctgggttggacggtgtgtgatgacctgctgtgtatccaggaggac
ggcactgtcctcatctacgacctgtttggtgccttcaaaagacacttcagcatgggcaac
gaggtggttcagaaccatgtgctggaagccaaggtgttccactcgccctacggaaccggt
gtcgccatagtaacgggggcctcacgtttcaccctggcgacgaacattgacgacctgaag
ctgaggagactcccggaagtcccaggcctccaggtggcaccctcctgctgggcagtgctg
actcaggacagacagaccaaagtgctgctggctaacggagctgacctctacatactggac
aacacatcttgcacccctgtgacccccccaggcctctctccccaggcctgtagcatcgtg
aacatggctgtgtcattcagctataagtacctggctctgttcaccgactctggacacctg
tggatgggctcagccaacctcaaggacaagctgagtgaggtggacaccaaggtgaggacc
cctcctaaacagatggtgtggtgcagaaggccaaagagccagcagccctctgtggtcatc
atgtgggacaggctcctcctggtggccggagagtgtaaagacaccatccaatacactctg
gatgaggagagtgtgtgtatagcggagctggatggagtgaggatcgtaggagggtccagg
catgagctgctgcaggaggtgccctcggcctgccaagacatctttaaaatcgcctccatg
gcccctggagcgttactactggaggcacacaaggagtacgagaagtccagtcagaaggca
gatgagtacctgagagagataaaggaacaaagtgtattgggagaagcagtgagacagtgt
gtggaggctgccggttatgaacatgaaccagagacccagaaaacactgctcagggctgcg
tcctttgggaagtgttttctcagtaactacccaccagagccgtttgtcaatatgtgtcga
gacctgaaggttctcaactctgtacgagactacaccgtggggatccccctcacacacaca
cagtacaaacagatgactgttcaggtcctcattgacaggttggtgtaccgtaagctgtat
cctctggccattgagatctgtcgctatctgaaaacaccagagtaccagggagtcagcaga
gttctcaaacactgggcctgctgcaaggtccagcagaaagaagagcctgatgagtccata
gcgcgtgctgtgagtgtgaagctgggtgaggcagcaggaatctcctactctgagatcgct
gccagagcatacgagtgtggcaggacggaactggccatcaagttgttggagtttgagcct
cgttctggggagcaggtccccctgctactaaagatgaagaggagtcagctggccctgagt
aaagctatagagagtggagacacagacctggtttacacggtggtgacatacctgaagaac
gagatgaacagaggagacttcttcatgacgctcagaaaccaaccggtggccctgagcctc
taccggcagttctgtaagcaccaggaacaggacacactgaaggatctgttcaaccaagac
gacgaccatcaggagctgggtaacttctacgtcaaggccagttacaaggagaagaagctg
gaggctcgcctgtctctgctgcagagtgctgtggacgagtacaacaaggccaagaacgag
tttggagccaaggcgacggaggaggagatgaagctgctgcggttccagaggcgtctggat
gaggagaagggagaggctctgctgggcctgtctctccaggagaccctgcacgccctcctc
acctctaacttccacaagcaggctgagcagctctacagggacttcagggtgccagacaag
aggtactggtggctgaagctgaccgctctggcagagaaggaggactgggaggagatggag
aaattcgccaagagcaagaagtcccccatcggctacctaccctttgtggaggtgtgtgtg
aaacgacacaataagtatgaggccaaaaagtatgtttccaaggtgaccccggagcaaaag
gtcaaagcccacttggccataggtgatctggagggggcagccgaggcagctatagagagg
aggagtgaaggagagatcagcaccgtcctgtctcgctgttctcccaccacagacagagcc
ctgctggagagactcaaccgagccagatccactgccgccaaaaagtga
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