Coregonus clupeaformis (lake whitefish): 121575982
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Entry
121575982 CDS
T08357
Symbol
zgc:113307
Name
(RefSeq) lumican
KO
K08122
lumican
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
cclu00535
]
121575982 (zgc:113307)
Proteoglycans [BR:
cclu00535
]
Extracellular matrix (ECM) proteoglycans
Small leucine-rich proteoglycan (SLRP) family
class II
121575982 (zgc:113307)
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Motif
Pfam:
LRR_8
LRR_4
LRR_1
LRRNT
LRR_14
Motif
Other DBs
NCBI-GeneID:
121575982
NCBI-ProteinID:
XP_041745217
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Position
10:46160992..46168145
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AA seq
376 aa
AA seq
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MAVLRSVLSLALTLALGLMLSVCRPVCGTPVASQDLDYGGVPLWINRLLGEPSVFSLRGR
MNRAWFRANNPQSCPDLCDCPIQWPSALYCDHRDLGELPDSMLYNTQYLFLQGNNISSLP
SSSLTNSSGLRWLIMDDNRLQTDGLQTSTLQNLTRLQYLFLNHNKLTAVPSGLPSSLRQL
RLAHNLITSISPGTFGNLHNLTLLLLQGNRLNVITETDFTGLVSLNLLDLSGNLFSSFPS
HLPPSIQQLYLSNNSLSALGEESLWGFTNLRYLRLSHCGLVSPSLHPQSFNLSSLVELDL
SYNKLTTIPLVPLTLQYLYLEANHIQEFNVSSFCREVGPLSYSRMRILRLDGNKMSYHLL
PPEWVYCLRVLHHIYI
NT seq
1131 nt
NT seq
+upstream
nt +downstream
nt
atggctgtactacggtcggtgctgtcccttgccctcactctagccctgggcctgatgctg
agtgtctgcaggcctgtttgtggcaccccagtggcatcccaggacctggactatggaggg
gttcctctatggatcaaccgtcttctgggggaaccctctgtattcagcctgaggggccgc
atgaaccgtgcatggtttagagccaacaacccccagtcctgccctgacctgtgtgactgt
cctatccagtggccctcagctctatactgtgaccacagagacctgggagagctgccggac
agcatgctttacaatacacagtacctgttcctgcagggcaacaacatctcgtccctgccc
tcctcctctctcaccaactcctcagggctccgctggctcatcatggatgataaccgtcta
cagacggacgggctgcagacctccacgctgcagaacctgacccggctccaatacctgttc
cttaaccacaacaagctgacagccgtgccctccggcctgcccagcagcctgcggcagctc
cgactggcacacaacctcatcaccagcatctccccgggaacctttgggaatttacataat
cttacattgctgctactgcaggggaataggctgaacgtgattacagagactgacttcaca
ggcctagtgtctcttaacctgttggacctgagcgggaacctcttctcctccttcccctct
cacctccctccatccatccagcagctctacctctccaacaactctctgtctgccctgggg
gaggaaagtttatggggcttcactaatctcaggtacctgcgtctgagccactgtggtcta
gtgagcccttccctccacccccagtccttcaacctatcttcccttgtagagctggatctc
tcttacaacaagctgacaaccatcccccttgtccccctcacattacagtacctatacttg
gaggccaaccacatacaagagtttaacgtctctagtttctgtcgggaggtgggtcctctg
tcctactccaggatgaggatccttcgtctggacggcaacaagatgtcctaccatctccta
ccacctgaatgggtctactgcctccgagtcctgcaccacatatacatctaa
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