Coregonus clupeaformis (lake whitefish): 121576005
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Entry
121576005 CDS
T08357
Symbol
msx1a
Name
(RefSeq) homeobox protein MSX-1a
KO
K09341
homeobox protein MSX
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cclu03000
]
121576005 (msx1a)
Transcription factors [BR:
cclu03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain ANTP: NKL
121576005 (msx1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Homeodomain
Homeobox_KN
HTH_NDX
DUF7645
Motif
Other DBs
NCBI-GeneID:
121576005
NCBI-ProteinID:
XP_041745239
LinkDB
All DBs
Position
10:complement(52835482..52837441)
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AA seq
282 aa
AA seq
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MAPTIAMSALSIGLKTEDIPSRSVLVGKGEMQTNLIVVAEETAIKPKVAILPFSVEALMA
DRKPNRDLTSPERSSMAGTSQALGSRVGSLSSLDNSVPSLAIGSSFSVGDIMNMQEDALV
KPESPESQDRNSWIQSPRFSPTPRRLSPPACPLRKHKTNRKPRTPFTTSQLLALERKFRQ
KQYLSIAERAEFSSSLNLTETQVKIWFQNRRAKAKRLQEAELEKLKMAAKPMLPPAFGIS
FPLGAHVPSSYGGSHHFQRHSLPMSPMGLYAAHVGYSMYHLA
NT seq
849 nt
NT seq
+upstream
nt +downstream
nt
atggccccaactattgccatgtcagctttatccattggcttgaaaactgaagacattcct
tcgcgttcggttctcgttggaaaaggcgagatgcagaccaatttgatcgtggtggcggag
gagacagcgatcaagcccaaagttgcgattcttcccttcagcgtcgaggctctgatggcc
gataggaaaccgaacagagacttgacatctccagaaagatcatccatggcggggacgtcc
caggcgctaggctcaagggtgggctcgctttcgagtctggataactcggtcccctccttg
gccatcgggtcgtcgttctcagtaggcgacattatgaacatgcaagaggacgcattggtt
aaacccgagagtccagaaagtcaagaccgaaattcttggatacagagccctcgcttttcg
cctactccacgaagactaagtccccccgcctgtccactgagaaagcacaagaccaacaga
aagccccggacccctttcaccacgtcccagctcctggctctggagaggaagtttcgccag
aagcagtacctctccatcgccgagcgcgcagagttctccagctcgctcaacctgacggag
acccaggtgaaaatatggtttcagaacagacgagccaaagccaagaggctccaggaggca
gaactggaaaaactgaaaatggcagccaagccaatgctgcctccggcgttcggaatttcc
tttccgctcggtgcgcacgtcccctcgtcgtatggagggtcgcaccacttccagaggcac
tccctgccgatgtctcccatgggactgtacgctgctcatgtcggatacagcatgtatcac
ctcgcctga
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