Coregonus clupeaformis (lake whitefish): 121576012
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Entry
121576012 CDS
T08357
Name
(RefSeq) homeobox protein TGIF1-like
KO
K19553
homeobox protein TGIF2
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04350
TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
121576012
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cclu03000
]
121576012
Transcription factors [BR:
cclu03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain TALE
121576012
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Homeobox_KN
Homeodomain
Motif
Other DBs
NCBI-GeneID:
121576012
NCBI-ProteinID:
XP_041745245
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All DBs
Position
10:51805768..51816728
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AA seq
485 aa
AA seq
DB search
MKPFKRALEEERMREQELSAMSDSDPFEDDSFPLDLSGGGGGSGKRRRRGNLPKEAVQVL
RSWLYEHRFNAYPSEQEKLGLSDQTSLSVLQICNWFINARRRLLPDLLRKDGKDPTQFTI
SRRAGKSEGRPSTGGCGGGNYPESPTSSVPSPALPPLRPSVIRPAPTLDLSLLGNTATTI
LLGAGYPGQEGYCVQALMQLDMQGLLRRVAEENSSKVISASPTGGLFNTPPPTPPELCPS
QDFSDLRLLVDAALQRAAEHESQKRLLQEYQSRAATEATGGCSHSSSAMGPTPPPAQSQA
TIDSPKEQSPTDKAVVSPVSVLIPVTVSSAPKLAVASVPAPTVPPRLAQKPVLVPVSTPV
PTKPPVPAPSPVQTFAPAPTLSCVPTLVPAPSSTQVPTLTPVPTPAPPLAPAPPALTPFL
GLASLQPLSSSIPNSSVQRAQSVPSVWSVVHSDVTVRQPVPVVQTPMATMWGSQHTLRAV
SETVN
NT seq
1458 nt
NT seq
+upstream
nt +downstream
nt
atgaaacccttcaaacgagctctggaagaggagcggatgcgagagcaggagctgtcagcc
atgtctgacagtgacccctttgaggacgacagcttccctctcgacctgtctggaggtggt
gggggctcgggcaagcggcgtcggcgtggcaacctgcccaaggaggcggtgcaggtgctg
cggagctggctgtacgagcaccgcttcaacgcctacccctcagagcaggagaaactcggc
ctgtcagatcagaccagcctctctgtgctgcagatatgcaactggttcatcaacgcccgc
cgccgcctcctccctgacctgctccgcaaggatggcaaagaccctacccagttcaccatc
tccaggcgggcagggaagagcgagggccgcccatccactggaggatgtggtggaggtaat
taccctgaaagccccacctcctcagtcccctctccagccctgccccctctcaggccctct
gtcatccggccagcccccacactagacctcagcctcctgggaaatactgccactaccatc
cttttgggagctggctaccccggccaagagggctactgcgtccaggccctgatgcagttg
gacatgcagggtctcctgaggagggtggctgaggagaacagctccaaggttatcagcgcc
agccccactggcgggctattcaacacgccgccccccacacctccagagctgtgccccagc
caggacttcagtgacctgaggttgctggtggatgcagctctccagagggctgccgagcac
gagagtcagaagaggctgcttcaggagtaccagagcagggccgctacagaagccacaggt
ggctgcagccacagcagcagtgctatgggtccgacccctccaccggcgcagagccaagct
acaattgactcgcccaaagagcagagtcctacggacaaggctgtggtgtccccagtttca
gtactaatccctgtcacagtctcctctgcacctaaactcgccgtggcctctgtaccggct
ccaactgtgcctccccgcctagcccaaaagccagtcctagtgccagtttcaacccctgtt
ccaaccaaaccccctgtcccagccccaagccctgttcaaacctttgcccctgcaccaact
ttgtcctgtgtcccaaccttagtcccagctccaagctctacccaagtcccaaccctaacc
ccagtcccaaccccggccccacctttagccccagcaccaccagccctcaccccattcctg
ggcctggcctccctccagcccctgtcctcctccatccccaacagcagtgtccagagggcc
cagtcggtgcccagtgtgtggagtgtggtccacagtgacgttactgtccgacagcctgtc
ccagtggttcagactcccatggccaccatgtgggggtcacagcacaccctgcgcgccgtc
agcgaaacggtcaattag
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