Coregonus clupeaformis (lake whitefish): 121576045
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Entry
121576045 CDS
T08357
Symbol
gdf5
Name
(RefSeq) growth/differentiation factor 5
KO
K04664
growth differentiation factor 5
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04060
Cytokine-cytokine receptor interaction
cclu04350
TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
121576045 (gdf5)
09133 Signaling molecules and interaction
04060 Cytokine-cytokine receptor interaction
121576045 (gdf5)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04052 Cytokines and neuropeptides [BR:
cclu04052
]
121576045 (gdf5)
Cytokines and neuropeptides [BR:
cclu04052
]
Cytokines
Transforming growth factors (RSTK binding)
121576045 (gdf5)
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Gene cluster
GFIT
Motif
Pfam:
TGF_beta
TGFb_propeptide
Motif
Other DBs
NCBI-GeneID:
121576045
NCBI-ProteinID:
XP_041745272
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Position
10:60782674..60788148
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AA seq
538 aa
AA seq
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MKVLKRLPLLLGCWTLLYLECIPVSLSHTGTAQRAAESRGKEHTGGAGKGANPGITSTAR
STVGNYGAAGWKSPSAARITRIRTGPPLIKGEAVKAKAVTSVSSPHGVTASRLSGAINLG
RKESARSWVPGGDATNAAATPALTALSVQTSKGAGTPGQSKVKTFPRAATSARTGQHRVI
AVQKYTAPLAQRSVKATSKLSDRDSPKHPLVTPHDYMLSLYWSLSTGEVNTSVLHEAGMA
NTITSFVDKGQDDRLPQLRRQKYNFNISSLEKEGLLGAELRILRKRLADPRKALSTGRVF
CLKLFTCAAGKQKATLLQTRTIVDHNTPKWEVFDVWKLFKNFQNTVQLCFELEALEQGRP
MDLRAMGFSRLGRQTKEKAFFLVFGRTKKRDLFYNEIKARSGHDNKTVYEYLFTQRRMRR
APTTRGKKLAKNPKPRCHRKQLHVNFKEMGWDDWIIAPLEYEAYHCDGVCDFPIRSHLEP
TNHAIIQTLMNSMDPDSTPPTCCVPTRLSPISILYIDSANNVVYKQYEDMVVESCGCR
NT seq
1617 nt
NT seq
+upstream
nt +downstream
nt
atgaaagtactgaaacgtctccctcttttattggggtgttggactctcttatacctggaa
tgtatcccagtgtcactgagccataccgggacggcacagcgcgcagccgagagccgaggc
aaggagcacacaggcggagcaggtaaaggagccaacccgggaatcacctcaactgccagg
tctacggtaggaaactacggcgcagcgggttggaagtctccaagtgctgcgaggatcaca
cgcattaggacaggacccccgctgataaagggcgaggcagtcaaagcaaaagctgtgaca
tcagtgtcatcaccgcacggcgtaacggcgagtagacttagtggagctatcaatttgggg
cgcaaggagtctgcgcgctcttgggtacccggtggagatgctaccaacgcagctgctacg
cctgctctcacggcgttgagcgtgcaaacaagcaaaggcgcaggcacgcccggacagagc
aaagtaaagactttccccagagctgcaacatcagcacgaactggacagcatagagtcatt
gctgtgcaaaaatacaccgctccgttggcccaaaggagtgtcaaagcaacgagcaaactg
agcgacagagactctccgaagcacccattggtgactccgcacgactacatgttgtcactg
tattggtcactatccacaggagaggtgaacactagcgtgttgcatgaagctggcatggcc
aacaccatcaccagctttgtggataaaggacaagatgaccgtcttccccagctgagaaga
cagaagtataactttaacatcagttccctggagaaggaggggttactgggtgctgagctg
cgcattctcaggaaaagactggccgacccacgcaaagcactttccactggcagagttttt
tgcctgaagcttttcacctgtgcagcaggtaagcagaaagctacactgctccaaactcga
accattgtggaccacaatacacccaaatgggaagtgtttgacgtttggaaactattcaag
aatttccagaacaccgtccagctttgtttcgagctggaggccttggaacagggccgcccc
atggacctcagggcaatgggcttcagtcgtctgggcaggcagaccaaagagaaggccttt
ttcctcgtgttcgggcgcaccaagaaacgcgacttgttctacaatgagatcaaagcacgg
tcgggccatgacaacaagactgtgtacgagtacctgttcacccagcggcgtatgcgcaga
gcccccaccacccgcggcaagaagctggccaagaaccccaagcctcgttgccacaggaag
cagctgcatgtcaacttcaaggagatgggttgggacgattggatcattgccccactggag
tatgaggcctaccactgcgacggggtgtgcgacttccccatccgctcgcacctcgagccc
accaaccacgccatcatccagacgctcatgaactccatggaccctgactcaactccgccc
acctgctgcgtgcccactcgcctcagcccaatcagcatcctctacattgactcagccaat
aacgtggtctacaaacagtacgaggacatggtggtggagtcctgtggctgcaggtag
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