Coregonus clupeaformis (lake whitefish): 121576253
Help
Entry
121576253 CDS
T08357
Name
(RefSeq) calcium-activated potassium channel subunit alpha-1-like
KO
K04936
potassium large conductance calcium-activated channel subfamily M alpha member 1
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04270
Vascular smooth muscle contraction
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09150 Organismal Systems
09153 Circulatory system
04270 Vascular smooth muscle contraction
121576253
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
cclu04040
]
121576253
Ion channels [BR:
cclu04040
]
Voltage-gated cation channels
Potassium channel, calcium- and sodium-activated (KCa/KNa)
121576253
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Slo-like_RCK
Slowpoke_C
BK_channel_a
Ion_trans
Ion_trans_2
TrkA_N
Motif
Other DBs
NCBI-GeneID:
121576253
NCBI-ProteinID:
XP_041745316
LinkDB
All DBs
Position
1:complement(78218894..78330431)
Genome browser
AA seq
1034 aa
AA seq
DB search
MAFNVFFLLYFGLRFIAANDKLWFWLEVNSVVDFFTVPPVFVSVYLNRSWLGLRFLRALR
LIQFSEILQFLNILKTSNSIKLVNLCSIFISTWLTAAGFIHLVENSGDPWENFQNSQALS
YWECVYLLMVTMSTVGYGDVYAKTTLGRLFMVFFILGGLAMFASYVPEIIELIGNRKKYG
GSYSAVNGRKHIVVCGHITLESVSNFLKDFLHKDRDDVNVEIVFLHNISPNLELEALFKR
HFTQVEFYQGSVLNPHDLARVKIESADACLILANKYCADPDAEDASNIMRVISIKNYHPK
IRIITQMLQYHNKAHLLNIPSWNWKEGDDAICLAELKLGFIAQSCLAQGLSTMLANLFSM
RSFIKIEEDTWQKYYLEGVANEMYTEYLSSAFVGLSFPTICELCYVKLKLLLIAIEYKSD
IRESSTLINPGNHVKMQEGTLGFFIASDAKEVKRALFYCKACHDDITDPKRIKKCGCKRS
KNNYNGYIKSIEEEQQSTLSPKKKQRNGNTRNSPNGSPKMMRHDPLLMPGNEQIENMDVN
VKKYDSTGMFHWCQSKDIEKVILTRSEAAMTVLSGHVVVCIFGDAKSALVGLRNLVMPLR
ASNFHYHELKPIVFVGSLEYLKREWETLHNFPKVSILPGTPLSRADLRAVNINLCDMCVI
LSANQNNIDDASLQDKECILASLNIKSMQFDDSIGVLQASSQGFTPPGMDRSSPENSPVH
GGLARQASITTGANVPIITELVNDSNVQFLDQDDDDDPDTELYLTQPFACGTAFAVSVLD
SLMSATYFNDNILTLIRTLVTGGATPELEGLLAEENALRGGYSTPQTLANRDRCRVAQLA
LYDGPFADLGDGGCYGDLFCKALKTYNMLCFGIYRLRDAHLNTQSHTSQCTKRYVITNPP
YGFELVPSDLIFCLMQFDHNAGQSRASLSHSSHSSHSSSKKSSSVHSLTATNRTNRAKSR
DSREKQNATRMNRMGQEKTWFTDEPENAAYHRNIDIKPMSTGHSSHTANHQVNQNPYKST
NNHIPSIREVEDEC
NT seq
3105 nt
NT seq
+upstream
nt +downstream
nt
atggctttcaacgtcttcttcctcttgtactttggtctacggtttattgcagccaatgac
aagctgtggttctggctggaggtgaactcagtggtggacttcttcacggttcccccagtg
ttcgtgtctgtctatctcaacagaagctggcttggcttgaggtttttaagggccttaaga
ttgatacagttctcagaaatcttacagtttttgaacatattaaaaacaagcaattccata
aaactggtgaacttatgttcaatcttcataagtacatggctaacagcggcaggcttcata
catctggtggaaaactcaggggatccttgggaaaacttccaaaattcccaagcactttcc
tactgggaatgtgtctacttgctcatggttactatgtccactgtgggctatggagacgtg
tatgcaaaaaccaccctgggacgacttttcatggtcttcttcatccttggtggtttggcc
atgtttgcgagctacgtccctgaaatcatagagttaataggaaaccgcaagaaatatggt
ggttcctatagtgcggttaatgggagaaagcacatcgtggtctgtggtcatataacactt
gaaagtgtgtccaacttccttaaagacttcctacacaaggacagggatgatgtcaatgta
gaaattgtttttctccataatatttcccctaatcttgagctggaagccttgtttaaacgc
cacttcacccaggtggagttctaccagggatctgttctcaacccacatgacctggccaga
gtcaagatagagtcagcagatgcctgtttgatcctagctaataaatactgtgcagaccct
gatgctgaggatgcctccaacatcatgagggtgatatccatcaagaactaccacccaaag
atcagaatcattacccagatgttgcagtaccacaacaaggcccaccttctgaacattccc
agttggaactggaaggagggtgacgatgccatttgccttgctgagctgaagctgggcttc
atagcacagagctgtctggctcagggcctctccaccatgctggccaacctcttctccatg
aggtccttcatcaagattgaagaggacacctggcagaagtattacctggaaggagtagcc
aatgaaatgtacactgagtacctgtctagtgcctttgtgggcctatccttccccaccatt
tgtgaactctgctatgtgaagctaaagctgctactgattgctatcgagtacaagtcagat
ataagggaaagcagcaccctcatcaaccctgggaaccatgtgaagatgcaggaaggcacc
ctgggtttttttatcgccagtgatgccaaagaagtaaagagggcacttttttactgcaaa
gcttgtcacgatgacatcacagatcctaaaaggataaagaaatgtggatgcaaacgatca
aaaaataactataacggatatatcaaatcaatcgaagaggagcagcagtcgacactgtcg
cctaaaaagaaacaacgcaatggaaacaccaggaactcgcccaacggttcacccaaaatg
atgaggcatgaccctctcctcatgccggggaatgaacagattgagaacatggatgtgaac
gtgaagaaatacgactccacagggatgttccactggtgccagtccaaagacatcgagaag
gtcatcttgaccagaagtgaagcagccatgactgttctaagcggccacgtggtcgtctgt
atatttggagatgcgaagtcggctttggtgggccttaggaaccttgtgatgcctctgaga
gctagcaacttccactaccacgagctgaaacccatcgtgtttgtgggttctctggagtat
ctaaagagggaatgggagacccttcacaacttccccaaagtctccatcttacctggcaca
ccattaagccgggccgatctgagggctgtcaatatcaacctctgtgacatgtgtgtcatc
ctgtcggccaatcagaacaatatcgacgacgcgtcactgcaggacaaggaatgcatcctg
gcgtcactcaacatcaagtccatgcagtttgacgacagcatcggggtcttgcaggctagc
tcccaaggtttcactcctccaggcatggacaggtcctctcctgaaaacagtccagttcat
ggggggttggcccgacaggcttccatcacaacaggagccaacgtccccattatcactgaa
ctagtgaatgactccaatgttcagttcctggaccaggatgatgatgatgaccctgataca
gagttgtacctcactcagcccttcgcctgtgggacggccttcgcagtcagtgtgctggat
tccctgatgagtgcgacatacttcaatgataatatcctcaccctgatccggacgctggta
acagggggggccactccggagctggagggtctgttggcggaggagaacgcgttacgagga
ggctacagcacgccgcagaccctcgctaaccgggacaggtgtcgcgtggcacagttagcc
ttgtacgacgggcctttcgctgacttgggagatggtggttgctacggtgacttattttgt
aaagcattaaaaacatacaacatgctgtgcttcggaatttatcgattaagagatgcacat
ttaaacacacaaagtcatacaagtcaatgcactaaacggtatgtgataaccaacccgccc
tatggttttgagctggtgccatcagacctgatcttctgcctgatgcagtttgaccacaac
gcgggtcagtcccgggccagcctctcccacagttcccactcctcccattcttccagcaaa
aagagctcctccgtccattctctcactgccaccaaccgcaccaaccgtgccaagagcagg
gactcacgggaaaaacagaatgctacaaggatgaatagaatgggccaagaaaagacttgg
tttacagatgagcctgagaacgcggcctaccacaggaacattgacatcaagccaatgagt
actggtcacagtagtcacacagccaatcaccaggtcaaccagaacccttacaaatccacc
aacaaccatattccatccatcagagaggtggaggacgaatgctga
DBGET
integrated database retrieval system
