Coregonus clupeaformis (lake whitefish): 121576347
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Entry
121576347 CDS
T08357
Symbol
snx5
Name
(RefSeq) sorting nexin-5
KO
K17920
sorting nexin-5/6/32
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
121576347 (snx5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cclu04131
]
121576347 (snx5)
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
cclu04990
]
121576347 (snx5)
Membrane trafficking [BR:
cclu04131
]
Endocytosis
Macropinocytosis
Sorting nexins
121576347 (snx5)
Domain-containing proteins not elsewhere classified [BR:
cclu04990
]
Phox homology (PX) domain-containing proteins
Sorting nexins
121576347 (snx5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps5
PX
Glutaredoxin2_C
FAN1_HTH
Motif
Other DBs
NCBI-GeneID:
121576347
NCBI-ProteinID:
XP_041745365
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All DBs
Position
1:complement(71443937..71463224)
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AA seq
399 aa
AA seq
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MTSTLDDSEKEKVRSVSVDLNNDASLLIDIPDALCERDKVKFTVHTKTTLSSFQKPDFSV
PRQHEDFIWLHDTLVETEDYAGLIIPPAPPKPDFESPREKMHKLGEGEATMTKEEYTKMK
QELEAEYLAVFKKTVQVHEVFLQRLSSHPILSKDRNFQIFLEYDQDLTVRRKNAKETFGS
FFKNMVKSADEVIISGIKEVDDFFEQEKTFLLDYSSKIKDSTARAEKMTRSHKNVADDYI
HISATLNSLSVDDNTALKKHLEKFADLFEKLRKVEGRVASDEELKLTELLRYYMRDIQAA
KDLLYRRARALADYENSNKVLDKARLKSKDIAQAEEHQQQCLQKFDKLSESGKRELTSFK
GRRVVAFRKNLIEMAELEIKHAKNNMALLQGCIELLKSN
NT seq
1200 nt
NT seq
+upstream
nt +downstream
nt
atgacgtctactcttgatgatagcgaaaaagaaaaggtgcgctctgtgtctgtggaccta
aacaacgatgcctctctgctcatcgacattcctgatgcactctgtgaacgtgacaaagtc
aagttcactgtccacaccaagaccaccctgagctccttccagaagccagacttctctgtt
cctaggcaacatgaggactttatctggctccatgacacgctggttgagactgaggactac
gctgggctcatcatccctccagccccaccgaagccagacttcgagagccccagggagaag
atgcataaactgggagagggtgaggccaccatgaccaaggaggaatacaccaagatgaag
caggagttagaggctgagtacctggctgtatttaagaagactgtacaagtccacgaagta
ttcctgcagcgattatcttctcaccccatcctgagcaaggacagaaacttccagatattc
ctggagtatgaccaggatctgaccgtacggaggaagaacgccaaggagacgtttgggagt
ttctttaagaacatggtcaagagcgctgacgaggtcatcatatcagggataaaggaagta
gatgatttctttgagcaggagaagaccttcctacttgattattcgtccaagatcaaagac
tccactgccagggcagagaagatgacacgctctcacaaaaatgtcgctgatgattacatc
cacatctctgccactttgaacagtctctctgtcgatgacaacacagcacttaaaaagcac
cttgagaagtttgcggacctgtttgagaaactaaggaaagtggagggtagagtggcgtca
gacgaggagctgaagctcacagagctgctccggtactacatgagggacatccaggcagcc
aaggacctgttgtacaggcgagcccgggccctggctgactatgagaatagtaacaaggtt
ctggacaaggcccggctgaagagtaaagacatcgcccaggctgaggagcaccaacaacag
tgtctgcagaagtttgacaagctctccgagtcgggaaaaagagagctgaccagttttaag
ggcaggagagtggtggctttccgtaagaacctaatagagatggctgaactggagatcaaa
cacgccaagaacaacatggctctgctgcagggctgcattgagcttctcaagagcaactga
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