Coregonus clupeaformis (lake whitefish): 121576403
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Entry
121576403 CDS
T08357
Name
(RefSeq) leucine-rich repeat-containing protein 4C
KO
K07523
netrin-G1 ligand
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04514
Cell adhesion molecules
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
121576403
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
cclu04515
]
121576403
Cell adhesion molecules [BR:
cclu04515
]
Immunoglobulin superfamily
NGL family
121576403
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_8
LRR_4
LRR_5
I-set
Ig_3
ig
V-set
LRR_14
Ig_2
LRR_9
LRRNT
DUF7617
Mid2
Sp38
Ig_6
DUF4293
DUF6821
Ntox46
Syndecan
RIFIN
Motif
Other DBs
NCBI-GeneID:
121576403
NCBI-ProteinID:
XP_041745442
LinkDB
All DBs
Position
11:11331878..11470561
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AA seq
645 aa
AA seq
DB search
MLNKMTSSRQQQTMRGPRWNRALSDPLFVLLLALQLLAVAGLVRAQTCPSVCSCSNQFSK
VICTRRGLREVPDGISTNTRYLNLQENLIQVIKVDSFKHLRHLEILQLSKNHIRNIEIGA
FNGLASLNTLELFDNRLTTIPNGAFEYLSKLKELWLRNNPIESIPSYAFNRVPSLRRLDL
GELKRLSYISDGAFEGLGNLRYLNLGMCNLKEIPNLISLVKLDELEMSGNQLTVIRPGSF
KGLIHLQKLWMMHAQIQTIERNSFDDLQSLVELNLAHNNLTLLPHDLFTPLHHLERVHIH
HNPWNCNCDILWLSWWLKEMVPANTSCCARCSSPASHKGRYIGELDQNYFHCYAPVIVEP
PVDLNVTEGMAAELKCRASSLTSVSWITPNGSIMTHGAYKIRISVLNDGTLNFTNVTMQD
TGTYTCMVSNSAGNTTASATLNVSSTENVLSYFTTVTVETIEPVHDEGRSTVWQKVGPTT
SAGSWETVTSTSTTTTTARTPLSTRATEKTFTIPVTDLNDSSMTGLDEVMKTTKIIIGCF
VAITLMAAVMLIIFYKMRKQHHQQNHHAPQRTIEIINVDEDCVTGGPAMEGHMTLPPLEH
EHLNHYNAYKSAYNHVSTINSIHSSVHEPLLIRASSKDNVQETQI
NT seq
1938 nt
NT seq
+upstream
nt +downstream
nt
atgttgaacaagatgacctcttctcggcagcagcagacgatgagaggtcctaggtggaac
cgggccctgtccgaccctttgttcgtgctgctcctggccctccagctcctggcggtggcg
ggcctggtgcgtgctcagacctgcccctctgtctgctcctgcagcaaccaattcagcaag
gtgatctgcacccggcggggtctccgtgaggtccccgacggaatctccaccaacacacgc
tacctgaacctgcaggagaacctcatccaggtgatcaaggtggacagcttcaagcacctg
cggcacctggagatcctgcagctcagcaagaaccacatccgaaacattgagattggggcc
ttcaacggcctggccagtctcaacaccctggagctgtttgacaaccgcctcaccacaatc
cccaatggggccttcgagtacctctcgaagctcaaggagctatggctgaggaacaacccc
atcgagagcattccctcgtatgcgttcaacagggtgccctcgctacggaggttggattta
ggggaactcaaacgcctctcgtatatttccgacggggcttttgaaggcctcggcaacttg
cgctacctgaacctgggcatgtgcaatctgaaggagatccccaacctcatctcgctggtc
aagctggacgagctggagatgtcagggaaccagctgacggtcatcagacctggctccttc
aaagggctgatccacttgcagaagctgtggatgatgcatgcccagatccagaccattgag
aggaactcctttgacgacctgcagtcgctggtggagctcaacttggcccacaacaacctg
accctgctgccccacgacctcttcacccccctgcaccacctggagagagtccacatccat
cacaacccctggaactgcaactgtgacatcctgtggctcagctggtggctcaaagagatg
gtgccggccaacaccagctgctgcgcacgctgcagttccccagccagccacaagggacgc
tacataggtgagctggaccagaactatttccactgttacgcaccggtgattgtggagccg
ccagtggacctgaacgtgacagagggcatggcagcagagctgaagtgcagggccagctct
ctgacctcagtcagttggattacgcccaatggctccatcatgacccacggtgcgtacaag
atccgcatttctgtgctcaacgacggcacgctaaacttcaccaacgttaccatgcaggac
acgggcacctacacctgcatggtgagcaactcagcgggcaataccacagcatctgccact
ctcaacgtgtcgtccacagagaatgtcctcagctactttaccacagtaacagtggagacc
atcgagcccgtgcacgacgaggggcgctccaccgtgtggcagaaggtgggccccaccacc
tccgccggctcctgggagactgtgacgtccacctccaccaccaccacaacggcccggacg
cccctctccacccgggccacagagaagacctttaccatccctgtcacggacctgaacgac
agctccatgaccggcctggatgaggtaatgaagaccaccaagatcatcatcggctgcttc
gtggccatcaccctcatggccgccgtcatgctcatcattttctacaagatgaggaagcag
caccaccagcagaaccaccatgcgccacagcgcaccatcgagataatcaacgtagacgag
gactgtgtgacgggcgggccggccatggagggccacatgactctgcccccgctggagcat
gagcacctcaaccattacaatgcctataagtctgcgtacaaccacgtctccaccatcaac
tccatacacagctcagtgcacgaacctttgttaatccgggccagttcgaaagacaatgta
caagagacccagatctaa
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