Coregonus clupeaformis (lake whitefish): 121576472
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Entry
121576472 CDS
T08357
Symbol
trmt13
Name
(RefSeq) tRNA:m(4)X modification enzyme TRM13 homolog
KO
K15446
tRNA:m4X modification enzyme [EC:
2.1.1.225
]
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
cclu03016
]
121576472 (trmt13)
Enzymes [BR:
cclu01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.225 tRNA:m4X modification enzyme
121576472 (trmt13)
Transfer RNA biogenesis [BR:
cclu03016
]
Eukaryotic type
tRNA modification factors
Methyltransferases
121576472 (trmt13)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRM13
zf-TRM13_CCCH
zf-U11-48K
Methyltransf_32
OrgC
Motif
Other DBs
NCBI-GeneID:
121576472
NCBI-ProteinID:
XP_041745570
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All DBs
Position
11:complement(27106633..27117866)
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AA seq
468 aa
AA seq
DB search
MELPTADGVSAPLPGRCAFYVEKKNRYCKMIVGSGKAYCGEHANAEKDCEKKRIPCPLDP
KHTVFEELLAKHLKKCNSREKPKPVFYVQDINAGPAIDEDTPNDEVPLSDRSKAELDLLI
EKLKTGVKGFKCKHEERIQSHPALHEALNDPKNGDSAFKHLKQQASLLGNMEDLHLLGPN
RCFVEFGAGKGKLSHWIHVALKAYDDIHFLLVERSSTRFKVDGKHQNADTKFERLQVDIQ
HLDLRKVPLLQEKGLPVVGVGKHLCGAATDLALQCLLGSSETAPHGIEGQPPSKRSKLQQ
QPGESTGTELEPIPRAAGETAAGRELRVGGVAIALCCHHRCDWRHYVGKEFFKERGLGAS
EFAAFLRMSSWATCGLRQARQTSPPQGQTDQTFEEEEHEVTEEAELDSLKGVLNAEDREH
IGRLCKLLIDQGRVHFLQQKGFDSRLLYYTSTDVSLENVLLTALPASR
NT seq
1407 nt
NT seq
+upstream
nt +downstream
nt
atggagctccccacggcggacggcgtatctgcacctctgcctggaagatgtgccttttac
gtggaaaagaaaaaccgatactgcaaaatgatagttggaagtggaaaagcatattgtggg
gaacatgctaacgcggaaaaggactgtgagaaaaaaagaataccatgtcctctggatcca
aaacacactgtattcgaagaacttttagcaaaacatctgaagaagtgcaactccagagag
aaacccaaacctgtgttctatgtgcaagatattaatgctggaccagccattgatgaggac
acccccaacgatgaggtacccttatcggatcgcagtaaagcagagctggacctgctcata
gaaaaactgaagactggcgtcaaagggttcaaatgcaaacatgaagaaagaatacaatct
caccctgctcttcatgaagctttgaatgatccaaagaatggggactctgcgttcaaacac
ctgaagcaacaggcgtcccttttaggaaacatggaggatttgcacttgcttggacctaac
cggtgttttgttgagtttggtgcagggaaaggcaagctttcccactggatccatgtcgct
ctgaaagcctatgacgacatccatttcctgcttgtggaaagatcaagcactcgttttaaa
gtagatggcaaacaccaaaatgctgatacaaaatttgaaagactacaagtggatattcag
caccttgatttgcgtaaagttcctctcctccaagaaaagggacttccagtggttggagtg
ggcaaacacttgtgtggtgcagcaactgaccttgctcttcaatgcctactgggcagctcg
gagactgcgccccatgggatcgaaggtcagccgcccagcaagcgctcaaagctccagcag
cagcctggagagtctacaggaacggagctagagcccattcccagggcagcaggggagact
gctgccggcagggagctgagggtgggtggggtggccatcgccttgtgctgccaccaccgc
tgtgactggaggcattatgtaggcaaggagttcttcaaggagagaggactaggtgcctct
gagttcgctgccttcctgcgcatgtcaagttgggcaacctgtggcttgcgacaagccaga
cagacctccccaccacaaggtcaaactgaccaaacgtttgaggaagaggagcacgaggtg
acagaagaggctgaactagacagcttgaaaggagtgttgaatgctgaggaccgtgaacac
ataggacgcctgtgcaagctgctgattgaccagggcagggttcacttcctgcagcagaag
ggatttgactcccgcttactctactacaccagcacagacgtttctctagaaaacgtgttg
ctaactgcacttcccgcctcacggtga
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