KEGG   Coregonus clupeaformis (lake whitefish): 121576599
Entry
121576599         CDS       T08357                                 
Name
(RefSeq) RNA polymerase II elongation factor ELL2-like
  KO
K15183  RNA polymerase II elongation factor ELL
Organism
cclu  Coregonus clupeaformis (lake whitefish)
Pathway
cclu03250  Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:cclu00001]
 09120 Genetic Information Processing
  09125 Information processing in viruses
   03250 Viral life cycle - HIV-1
    121576599
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:cclu01009]
    121576599
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:cclu03021]
    121576599
Protein phosphatases and associated proteins [BR:cclu01009]
 Protein serine/threonine phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-1
    PP1-interacting proteins (PIPs)
     121576599
Transcription machinery [BR:cclu03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Super elongation complex (SEC)
     121576599
    Little elongation complex (LEC)
     121576599
SSDB
Motif
Pfam: ELL Occludin_ELL
Other DBs
NCBI-GeneID: 121576599
NCBI-ProteinID: XP_041745787
LinkDB
Position
11:complement(12936274..13000599)
AA seq 603 aa
MAALRQEHRYGLSCAKINKKAHNKTLFHVKLTDTAIRTLEAYQNLKGSLPNQPSICFKGS
QGYIKIPAPSPEAPDALRVFSFYLSSDGKDKPQASFDCIHHHVSGEGREHLEGQGSIQDK
ITVCATDDSYQMTRERMSQVEKDIMSRSAIEIKPGSTHGKCVKIQRKQGLSSGMDSGSNK
HSPSNKRSGAPSPVALRPLRDRIIHVLALKPYRKPELLLWLERERASPKDKTDLGTVLDE
VAKLNPKDHSFTLKDEFYRHVQKDWPGYLEEEKPLIHRLLARKLQPLSSSSQLKSFQSNH
SFHKTPGDSPSQLSPVKTPSVKRPVPSDLSDCQTPKKQRLLDHSLPLQSPSNGHLGPIGV
LSSSGPGNTSVQTKTEFERTNNHVQGSPNGLYTRHKLGGSSSIPKLERTEPVLAVPSPKA
LQTESSICTDQLLANGQHKKKKSKKHKDKDRERLKQDWIENSPDLKPNQENVNDHEGAKT
PVTRTSPEELPDYLIKYNTITASEQRQQYKQDFCAEYDEYRALHDRIGTITEMFVQLGSK
INTLSPGTQEYKLMEEQILQKYRKYKKKFPGYREEKKRCEYLHQKLSHIKGLILDYDRTQ
APS
NT seq 1812 nt   +upstreamnt  +downstreamnt
atggcagcgctgaggcaggagcatcggtatgggctctcctgtgcaaaaatcaacaaaaaa
gctcataataaaactctatttcacgtcaagctaaccgataccgccattcgaacgcttgaa
gcctatcaaaatcttaagggatccttaccaaatcagccatcaatttgcttcaaggggagc
caggggtacatcaagatccctgccccgtccccagaggccccagatgcactccgggtcttc
tccttctacctgtccagtgatggcaaggacaaacctcaggccagctttgactgcatccac
caccatgtctcaggggagggcagggagcacctggagggccagggcagtattcaggacaag
atcactgtatgtgccactgatgactcataccagatgacccgagagcgcatgtctcaggtg
gagaaggacatcatgagcaggtcggccatcgagatcaagccgggctccacacatggtaaa
tgtgtgaagatccagaggaagcagggcctgtcgtcaggcatggacagcggcagcaacaag
cactcccccagcaacaaaaggagcggggcccccagcccagtggcccttaggcccctgaga
gaccgcatcatccacgtcctggccttaaagccctacaggaagcctgagctgctgttgtgg
ctggagagggagagggccagtcccaaggacaagactgacctgggaacagtactggatgag
gttgctaaactgaaccccaaagaccacagctttactctgaaggatgagttctacaggcac
gtccagaaggattggcccggttacctagaggaagagaagcctctcatccataggctcctg
gccaggaaactgcagccactgagcagcagtagccagttgaagagtttccagtcaaaccat
tcattccacaaaacccctggggattctccgtcacaactcagcccggtcaagactccctct
gtgaaacgcccagtgccctcagacctatctgattgtcagacccccaagaagcaaagacta
ttagaccacagtttacccctgcagtccccttccaatggacaccttggtcccattggagtc
cttagctcatctggtccaggcaacaccagtgtacagaccaaaacagagtttgagagaacc
aacaatcacgtccagggaagccctaatggtctctacacacggcataaactgggtggctcc
tccagtattcccaagctggagaggacagagccggtcctagcagtaccaagccccaaggct
ctacagactgagtcctccatctgcactgaccagctgctagccaacggccagcacaaaaag
aagaagtccaagaagcacaaagacaaggaccgggagcgcttaaaacaggactggatagag
aacagtcccgacctgaaaccgaaccaggaaaatgtcaatgaccatgagggggctaaaaca
cctgtcactcgtacctcaccggaggagctgcccgactatttaataaagtacaacaccatc
acagcctcagaacagcgacaacagtacaagcaggatttctgtgcagagtacgatgagtac
agggccctgcacgaccggatcggtactatcactgagatgtttgttcagctgggttccaag
ataaacacactgtcccccggtacacaggaatacaagctcatggaggaacaaatactgcag
aaatatagaaagtataagaaaaagttccctggttaccgggaagagaagaagcgatgcgag
tatctgcatcagaaactttcccacatcaaaggtctgatcctggactatgaccgtacccag
gccccttcatag

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