Coregonus clupeaformis (lake whitefish): 121576616
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Entry
121576616 CDS
T08357
Name
(RefSeq) nuclear receptor ROR-alpha A-like isoform X1
KO
K08532
RAR-related orphan receptor alpha
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cclu03000
]
121576616
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
cclu03310
]
121576616
Transcription factors [BR:
cclu03000
]
Eukaryotic type
Zinc finger
Cys4 thyroid hormone receptor-like
121576616
Nuclear receptors [BR:
cclu03310
]
1. Thyroid hormone like
1F. RAR-related orphan receptor
121576616
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Gene cluster
GFIT
Motif
Pfam:
zf-C4
Hormone_recep
Motif
Other DBs
NCBI-GeneID:
121576616
NCBI-ProteinID:
XP_041745838
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Position
11:14556785..14848001
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AA seq
525 aa
AA seq
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MESPPDPASDPGNSASEPATPARETPVNLETLRKADHPAPVRRQTCSSTNRGGLTNKQGI
SVAKKTHTSQIEIIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNAAYSCPRQKNCLI
DRTSRNRCQHCRLQKCLAVGMSRDAVKFGRMSKKQRDSLYAEVQKHRLQQAQRDHQQPGE
AEPLTPTYGLSANGLTELHDDLSGYMDGHTPDGSKPDSAVSSFYLDIQPSPDQSGLDING
IKPEPICDFAPGSGFFPYCSFTNGETSPTVSMAELEHLAQNISKSHMETCQYLREELQQM
TWQAFLQEEMESYQTKPREVMWQLCAIKITEAIQYVVEFAKRIDGFMELCQNDQIVLLKA
GSLEVVFVRMCRAFDSQNNTVYFDGKYAGPDVFKSLGCDDLISSVFEFGKNLCSMHLSED
EIALFSAFVLMSADRSWLQEKVKVEKLQQKIQLALQHVLQKNHREDGILTKLICKVSTLR
ALCSRHTEKLTAFKAIYPDIVRSHFPPLYKELFGSDFEQSMPIDG
NT seq
1578 nt
NT seq
+upstream
nt +downstream
nt
atggagtcccctccagatccagcaagcgacccgggcaacagcgcctccgagccggctacc
ccggccagggaaaccccggtaaacctggagacgctccgaaaagcggaccatccagcccct
gttcgaaggcagacctgttcaagcaccaacagaggtggactcacgaacaagcaaggtatt
tcagtagcaaagaagacacatacctctcaaatcgaaataattccctgcaagatctgtgga
gacaaatcatcaggcatccattacggtgtgataacatgtgaaggctgtaagggcttcttc
aggaggagtcagcagagcaatgcggcctactcatgcccccgtcagaaaaactgcctgatc
gaccgcaccagccgcaaccgctgccagcactgccggctgcagaagtgtctagcagtgggc
atgtcacgggacgcggtaaagtttgggcgcatgtcaaagaagcagcgggacagcctgtat
gcggaggtgcagaaacaccggctgcagcaggcgcagcgcgaccaccagcagcccggcgag
gcagagccactcacgcctacctacggcctctcggccaatggcctcacagagctccacgat
gacctcagtggctatatggacggccacacccccgacggtagcaagcccgactcagcagtc
agcagcttctacctggacatccagccctcccctgaccagtccggcctggacatcaatggc
atcaagcctgagcccatctgcgacttcgcccccggttcaggcttctttccctactgctcc
tttaccaacggagagacatcccccaccgtgtccatggctgagctagagcacctggcccag
aacatctccaagtcccacatggagacgtgtcagtacctgagagaggagctgcagcagatg
acctggcaggccttcttgcaggaggagatggagagctaccagaccaagccccgggaggtc
atgtggcagctgtgtgctatcaaaatcacagaggccatccagtacgtggtggagtttgcc
aagcgcatcgacggcttcatggagctgtgtcagaatgatcagatagtgctactgaaagca
ggctctttggaggttgtgtttgtgagaatgtgccgtgccttcgactctcaaaacaacaca
gtctatttcgatggaaagtatgctgggcccgatgtgtttaagtcattaggctgtgacgac
ttgatcagctccgtcttcgagtttgggaagaacttgtgttctatgcacctgtctgaggat
gagatcgccctgttctccgcatttgtgttgatgtctgcagaccggtcctggctccaggag
aaggtgaaggtggagaaactccagcagaagatccagctggcactgcagcatgtcctgcag
aagaaccacagagaggatggcatactcaccaagttgatatgcaaagtgtcaacactgcga
gcgctgtgcagcaggcatacagagaagctgacggctttcaaagcaatatacccagacatt
gtgcgttcccactttccccccttatacaaggagctcttcggatcggactttgagcagtcc
atgcccattgacgggtag
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