Coregonus clupeaformis (lake whitefish): 121576620
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Entry
121576620 CDS
T08357
Symbol
chd2
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 2 isoform X1
KO
K20091
chromodomain-helicase-DNA-binding protein 2 [EC:5.6.2.-]
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
cclu03036
]
121576620 (chd2)
Chromosome and associated proteins [BR:
cclu03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
121576620 (chd2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_Hrp3
CDH1_2_SANT_HL1
Helicase_C
CHD1-like_C
Chromo
ResIII
HDA2-3
Motif
Other DBs
NCBI-GeneID:
121576620
NCBI-ProteinID:
XP_041745844
LinkDB
All DBs
Position
11:15322157..15353821
Genome browser
AA seq
1824 aa
AA seq
DB search
MMKNKNKKQEDDGSTQSNASSNSASEESNHSGLESGSQSESEQGRERRRSHHSGESNSSS
ESGSQSGSESESQQASAEVKDRPPVKKKDNLSDVKKMWEEHPDVYGVRRSNRSRQEPARL
NIGAGGSSDSEGESPKRKAPRQKKKENTWKSDESDDDDDDDEQEEEDASSADSEQEEKKV
RSRRLPARRPQTKSSTVKKQQPPKGRKTRKQESSVEEDDDDDDDDDDDEDTPKRQTRRRV
AAKVSYKEDQNDFETDSDDLIEMEGAEVEPEEDSETIEKIMDTRTGKKGACGASTTQYAV
EENGDPGADFDPEKDEGETHYLIKWKGWSYIHNTWESIDSLTQQKVKGLKKLDNFKKKND
ELNAWLSKASPEDSEYYNCQQELTTDLNKQFHILERVIATKTGKTQGPSDFPSHSHKNGA
STNEPEYLCKWMGLPYSECTWEDGALLGKKFQHCIDSFTYRNSSKTVPSKDCKVSEVLKQ
RPRFVALKNQPLYIGDENLQLRDYQLDGLNWLAHSWCRCNSVILADEMGLGKTIQTISFL
SYMFHQHQLYGPSLVVVPLSTLTSWQREFDTWAPDMNVVVYLGDVMSRKSIRDYEWVCHQ
TKRIKFNALITTYEILLKDKGVLGNINWSFLGVDEAHRLKNDDSLLYKTLIEFRSNHRLL
ITGTPLQNSLKELWSLLHFLMPDKFENWEDFESEHGKGTDNGYQSLHKVLEPFLLRRVKK
DVEKSLPAKVEQILRVDMSAVQKQYYKWILTRNFRALQKGTRGSSSGFLNIVMELKKCTN
HGFLIKQPEEECDTPQEHLQALVRGSGKLVLLDKLLTRLRERGNRVLIFSQMVRMLDILA
EYLALKRYPFQRLDGSIKGEIRKQALDHFNAEGSEDFCFLLSTRAGGLGINLASADTVVI
FDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGSVEEDIIERAKKKMVLDHLVIQRMD
TTGRTVLDNNSGNSNSNPFNKDELTAILKFGAEDLFKEAEGEETEPTEMDIDEILRLAET
RESDQGSSATDELLSQFKVANFSNMEESAPELVERTVPDWDDIIPEDQRRRLEEEQKQKE
MEDIYMLPRSRSSNKRAQANDSDSDVGSKLKHRSSGSESETDDSGDDKKPKRRGRPRARK
NNVEGFTDAEIRRFIKAYKKFGAPLERLEGIARDSELVDKSQADLKRLGELIHSSCVTAV
QEHEEHLRENPSEAKGPGKRRGINIKISGVQVNAKSIIQHEEEFEPLHKAVPANLAERNQ
FQLTCRVKVPHFDVDWDLQDDTQLLLGVYEHGYGNWDLMKTDPDLKLADKILPDDPEKKP
QGKQLQARSDYLLKMLKKEADSKDVTKEEAKVKKRKPRVKKENKAPKDEQGNDISSPRMS
DNPSEEGEVRDDGTEKTPTKKRQKKKENKENKEKQGTPKKEKDVDKDKKRPKAKKEKAKE
AKGKKPQGPVHITAGSDPVPIGEEDDELDQENFSICKERMRPVKKALKQLDKPDEGLSVQ
EQLQHTRTCLLKIGDRITECLKAYSDPEHVKTWRRNLWIFVSKFTEFGARKLHKLYKMAQ
KKRSREEEKEHRKKGDDPSGRKKPFRAEPSGSSRDSTGTQPSSKSHPGMPHPSPTSPHGP
HREGYNQSNKRHFGNDDRGDWQRDRKYNYPGNSNQPWQGERHHPYDTHRYKDHHYGDRRL
REDSYRSSSSSYRSGGSSSSPRKRPYDQYDSDREHRDRRAYYDRHPDSKRRRSDDFRPPQ
DFRGSGGGHPQDFRVRMPEHRGPPGPAGPEHFTRPYPDNKPPPLLDPRSPQAQKSPQDSR
SPTAERTAELKAAGADLNWNNRKT
NT seq
5475 nt
NT seq
+upstream
nt +downstream
nt
atgatgaagaataagaataaaaagcaagaagatgacggttcgactcaaagcaatgcatca
agcaattcggcctcagaagaatcgaaccactctgggttggagtctgggagtcagtcggag
agtgagcagggcagggagaggagaagatcgcaccactcaggagagtccaacagctcttct
gaatctgggagccagtctgggtctgagagtgaatcccagcaggcctcggcagaggtcaag
gacagaccaccagttaaaaagaaagacaatctgtcagatgtgaagaagatgtgggaagag
catccagatgtctatggggtcaggcggtcaaatcgcagtagacaagaacctgctcgtctc
aatattggagctgggggtagcagtgactccgaaggtgaaagtcctaaaagaaaagcacca
cgacagaagaagaaagaaaatacctggaaaagtgatgaatcggatgatgatgatgatgat
gatgagcaggaggaggaggatgccagcagtgcagacagtgagcaggaagagaaaaaagtt
agatccagacgacttcctgctagaagaccacagaccaaatcatctacagtcaaaaaacag
cagcctccgaagggaaggaaaaccaggaaacaagagtcatctgtggaggaagatgatgat
gacgacgacgatgatgatgatgatgaagataccccaaagagacaaacccggcgaagggtg
gctgccaaagtcagttacaaggaggaccaaaatgactttgagacggactctgacgacctg
atagagatggagggagctgaggtggagccggaagaggacagcgagaccattgagaagatc
atggacaccaggacaggcaaaaaaggagcctgcggggcttccactacccagtatgctgtg
gaggaaaacggggacccaggagcagactttgacccagagaaggatgagggagagacccat
tacctgatcaagtggaaaggctggtcctacatccacaacacctgggagagcatcgactcc
ctcactcaacagaaggtcaagggactcaagaaactagacaacttcaagaagaagaatgat
gagcttaatgcttggttgagcaaagcatcccctgaggattcagaatattacaactgccaa
caagagctaaccactgatttaaataagcagttccatattctggagagagtcattgcgact
aaaaccgggaagacacagggaccctcggatttcccctctcacagccacaagaatggtgct
tcgaccaatgagccagagtacctgtgtaagtggatgggcctgccctattcagagtgcacc
tgggaggatggagctctgctggggaagaagttccagcactgtatagacagcttcacctac
aggaactccagtaaaacagtcccctccaaagactgcaaagtgagtgaggtgttgaaacag
aggcccagatttgttgcactaaagaaccagccattgtacattggggatgagaacctacag
ctgagagattaccagttagatggactgaactggctggctcactcctggtgcaggtgcaat
agtgtgatcctggctgatgagatgggtctggggaaaaccatccagaccatctcattcctg
tcctacatgttccaccagcaccagctgtatgggccctccctggtggtggtgcccctgtcc
accctcacctcctggcagagagagtttgacacctgggcccccgacatgaatgtggtggtc
tacctgggagacgtgatgagcaggaaatcgatccgtgactatgagtgggtatgccatcag
acgaaaagaataaagttcaatgcacttataaccacgtatgaaatcctactgaaagacaag
ggggtgttggggaacataaactggtctttcctgggtgtggacgaagctcacaggctaaag
aatgacgactccctgttgtacaaaaccctgatcgagttccggtccaaccacagacttcta
atcacagggacaccactgcagaattctctcaaagagctgtggtcccttctgcacttcctc
atgcctgacaagtttgaaaattgggaagattttgaaagtgagcatggtaaagggactgac
aatggctaccagagcctccacaaagtccttgagcccttcctcctgaggcgtgtcaagaag
gatgtggagaaatccctgcctgccaaggtagaacagatcctccgtgtggacatgtctgcc
gtgcagaagcagtactacaagtggattcttaccaggaacttcagggccctgcagaaaggc
acccgaggcagctcctctggcttcctcaacattgtcatggagctgaagaagtgcactaac
catggtttccttatcaaacagcctgaggaggagtgtgacactccacaggagcacctgcag
gcgttggtgaggggcagtgggaagctggttcttctggacaagctgctgaccagacttcgg
gagaggggcaaccgagtcctcatcttctcccagatggtgcgcatgttggacatcctggct
gagtacctggccctgaagcgctacccattccagcgcctggatggctccataaagggagaa
atacgaaaacaagcacttgaccactttaatgctgaaggctctgaggatttctgtttcctg
ctgtccacaagagctggaggtttgggtatcaacctggcctctgcagacactgtggtcatc
tttgactctgactggaaccctcagaacgacctgcaggctcaggccagggctcacaggatc
ggccagaagaagcaggtgaatatctatcgcttggtcacaaagggatctgtggaggaggac
attattgagagagccaagaagaagatggttttggaccatcttgtaattcagagaatggac
accactggtcgaactgtactggataacaactccggaaattcaaattccaacccattcaat
aaagatgagttgactgccatcctgaagtttggagctgaagatctgttcaaagaggcagag
ggagaggagactgaacctacggagatggatattgatgagatcttgcggttggctgaaacc
agagaaagcgaccagggatcaagtgccacagatgagcttctctctcagttcaaggtggcc
aacttctccaacatggaggagagtgctccagagctggtggagcggacagtgcctgactgg
gacgacatcatccctgaggaccagcggcggaggctggaggaggagcagaagcagaaggag
atggaggacatttacatgctgcctagaagcagaagctccaacaagagggcccaggccaac
gacagtgacagtgatgttggctccaagctgaagcaccgctcctctggctctgagagcgag
acggacgacagcggcgatgacaagaagccaaagaggagaggaaggcccagagcccgcaag
aacaacgtggagggattcactgatgcagagatccgcaggttcatcaaggcttataagaaa
tttggagctccgcttgaaaggctggagggcattgcccgggactctgagctggtggacaaa
tcccaggcagacctgaagagactgggagagctgatccacagcagctgtgtgacggctgtc
caagagcatgaagagcacctcagagagaaccccagtgaagccaaaggtcctgggaagcgc
agaggtattaacatcaagatctcaggagtgcaggtcaatgccaagtccatcatccagcat
gaggaggagtttgagccattgcacaaagctgtgccagccaatcttgctgagagaaaccag
ttccaactgacctgcagagtgaaggtgcctcactttgacgtggactgggatctgcaggat
gacactcaactgttgctgggggtctatgagcatggctacggcaactgggatctgatgaag
acagacccagatctcaaacttgcagacaagattctccccgatgacccagagaagaaacct
caagggaagcagttgcaggccagatcagactaccttctgaagatgctgaagaaagaagcg
gacagtaaagatgtcactaaggaggaggccaaagtgaagaagaggaagcctcgggtgaag
aaagagaacaaggcccctaaagatgagcagggcaatgacatctcctccccccgcatgtca
gacaacccctcagaggaaggggaggtgagggatgacgggacagaaaaaactcccacaaaa
aagagacagaagaaaaaggagaacaaagagaacaaagaaaaacagggaactcctaaaaaa
gagaaggacgtggacaaagacaaaaaacgtcccaaggcaaaaaaagaaaaggctaaagaa
gccaaagggaagaagccccaggggccggtccacattactgctgggagtgaccctgttccc
atcggagaggaggacgatgagctggaccaggagaacttcagcatatgtaaggagcgcatg
aggccggtgaagaaggccctgaaacagctagataagcctgacgagggcctgtcggttcag
gagcagctccaacacacacgcacctgcctgctgaagataggagaccgcatcactgagtgc
cttaaagcctacagcgacccagagcatgtcaaaacatggcgtcggaacctctggattttt
gtgtctaagttcacagagttcggagcgaggaagcttcacaagctgtacaagatggctcaa
aagaagcgttctcgggaggaggagaaggagcatagaaaaaagggggatgacccgtcgggc
aggaagaagcctttcagagcagagccgtctggttccagtcgagactccaccggcacccag
ccatcatccaagtctcatccaggcatgccccacccctctcccacatccccccatggtccc
cacagagaaggctacaaccagtccaacaagcgacactttggaaatgatgatcgaggagat
tggcagagagaccgtaaatacaactaccctggaaatagcaaccagccctggcaaggcgag
cgacatcatccatacgacacccatcggtataaggaccatcactatggcgaccgtcgtctg
cgtgaagactcctaccgcagcagctctagtagttatcgtagtggcggcagcagcagctcc
cctcggaagaggccatatgaccagtatgacagcgaccgagaacacagggaccgtcgggcc
tattacgacagacatccagactcaaagcggagacgcagcgatgacttccgtcctccccaa
gacttcagggggagtggaggaggccatccccaggacttcagggtgaggatgccagagcac
aggggtcccccggggccagcagggccagaacacttcacccggccctatccagacaacaaa
ccccctcccctgctggacccacgctccccacaggctcagaagtccccccaggactcgcgc
tcgccaaccgcagagcggactgcagagttgaaagcagctggggctgatttaaactggaac
aacaggaagacatga
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integrated database retrieval system
