Coregonus clupeaformis (lake whitefish): 121576641
Help
Entry
121576641 CDS
T08357
Name
(RefSeq) enhancer of mRNA-decapping protein 4 isoform X1
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
121576641
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cclu03019
]
121576641
Messenger RNA biogenesis [BR:
cclu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
121576641
mRNA degradation factors
5'-3' decay
Decapping complex
121576641
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_TEP1_2nd
Beta-prop_EDC4L
WD40_Prp19
WDR55
Pdc1_Ge1
Motif
Other DBs
NCBI-GeneID:
121576641
NCBI-ProteinID:
XP_041745883
LinkDB
All DBs
Position
11:17398917..17447174
Genome browser
AA seq
1418 aa
AA seq
DB search
MASNSNIDIEGATQHLRDILKLDRPGNNVDASPCENQRKTSFNGELNGRLPGAGNRSTMA
ESTDPNSDNMNTQEGQIICLSGDDGSTCIPITSNNVEIVASRDSSIDSKARGSNKVKIQP
VAKYDWEHKHYYGNLIAVSNSYLAYAIRGANNQAMIRVLSLGSAERTLLKGFTGAVTDLA
FAHLDSTLLGCVDEAGNLVIWQLTCHSSKIQDQVVVHVRRPEDTPLNSNRRLIWCPFILE
DNEENPEDASQTLALLHEDRAEVWDLEILRSNNSTWPVDATDLKDGVITIKGHTERISEG
ALSPDGTVLATASHDGYVKFWQIYIEGQDQPSPLPGFFHRCLHEWQPHNGNPLSCLLFCD
NHKKQDPDVPFWRFLITGADQNQELKMWCTVSWTCLQTIRFSPDPFNSSVLPSLKASLDL
SAECLILSDVQRKVLYVMELLQDQEKGHASFTAVSEFLLTHPVLSFGVQDVSRSRLRHTE
VLLPDEESESMTAEGNQGPMESRAGIQIKLYCVHTKSLQDVQIWFQPNLGSGSSLFLPHS
DSNDGFGFSDHLTDMSVECLSSDKESGCGSQNDLRKIPALPAPADFMSPTGATTMPKLMT
PDAFMTPSASVPASPGSSASSLTIVTAMTSNSDSGARGGEELNQNLKMSVESSSSSSLTL
SASTSSPRASSILISGLGDNMPVLPSPNPPLSLDPQVIEPMLIQQASPTLARSPDVISSA
STAMSQDIPEIASETLQRGLGVVSGAESRDPLPAHHTDSMASAASALHLLSPRNRNNSGH
LPLELGAGVGAVEAEQRLSNTPSLLENALSQENAAAAAAASCSDNNTSHPWPAAPDITRE
TRNSLRDNGLGDCSREEMKDRHMSSPYHRRTYHLTQNDSQDASAEQSDHDDEGASLASSS
GNCGARSSQRLPVKEWKSSPRGSPKLKRKSKKDDGDASHASHVSHASQSRQPEHHNHQHQ
QMNPEMQEELLMLLRNQQRELADLRQSQLELLQRVTGHMDAVQSSVIAHVEHVMVSQQEH
EQRRMERILAEGHNRNQQLQEHLSQQLAQTLNNTLCNRLDKTLREEMKKTVPPTIIKSLE
PVTAQMSNTIAAKLTAVEAALKENVSKVVKSKNTTDAIGRAAAEAMQGPIQAAYKDAFQS
IVLPVFERGCQSMFQQINDSFKQGTHEYIQQLETHVKNRKQHEQEARDPMIGQLQQMIDT
FQNSTDQLATTVTAGVRSEVQHQLHMTVGNLQESILTQVQRIVKGEVSMAMKEQQAAVTS
SIMQAMRSAAGTPIPTAHLDYQAQQANILQLLQQGQLNQAFQQALSASDLNLVLYVCETI
DSQQVFGQHPCPLIQPVLLSLIQQLSTNLATRSELKISYLEDAVMNLDHGDPVTRDHMST
VLSQVRQKLIQFLQQDPHSPLSKRARRLVMMLQGLVNH
NT seq
4257 nt
NT seq
+upstream
nt +downstream
nt
atggcttcaaattcaaacatagatatagagggtgcaacccagcatcttcgtgacatatta
aagttggacagacccgggaacaacgtcgacgcatctccatgtgagaaccaaagaaaaaca
tctttcaatggcgaattgaatggacgtctgccgggagctggcaacaggtcaaccatggct
gaatccacagaccctaattcagataatatgaacacccaagagggtcagataatctgcctc
tctggggatgatggctccacttgcattcccatcacatccaacaatgttgaaattgtagcc
agtcgagactcaagcattgacagcaaggcccgtggcagcaacaaggtaaaaatccagcct
gtcgccaagtacgactgggagcacaagcattactacggcaacctgatagcagtctctaac
tcatacctggcatatgccatccgaggcgcaaacaaccaggccatgatccgtgtgttgagc
ctgggctccgcagagcgcaccctgctgaagggcttcactggtgcagtcacagacctggcc
ttcgctcatttggactccaccctgctgggatgtgttgatgaggccggcaacctggtcatc
tggcagctcacctgccacagcagcaagatccaggatcaagtggttgtccacgtccggagg
ccagaagacacgcctctgaactccaataggaggttgatctggtgtcccttcatcctagag
gacaatgaagagaacccggaggatgccagccagaccctggccctgctgcatgaagacagg
gctgaggtgtgggatctggagatcctccgcagcaacaatagcacctggccagtagatgcc
actgacctgaaggatggggttataaccataaaaggacatacagagcgtataagtgaaggt
gccctgtctccggatggcacagtcttggccacagccagtcatgatggatatgtaaagttc
tggcaaatctacattgaaggacaggaccagccaagtcctctccccggcttctttcacaga
tgtctgcatgagtggcagccccacaatgggaaccccctctcctgcctgctgttctgtgac
aaccacaagaaacaggacccagatgttccattctggcgctttctgattactggagctgat
cagaaccaggagctgaagatgtggtgcacagtgtcatggacctgcctgcagactatcagg
ttctctccagacccgttcaactcctcagtcctgcccagtctgaaggccagcctggacctc
tctgcagaatgccttatcctcagcgacgtacagagaaaggtgttgtatgtgatggagttg
ttgcaggaccaggagaagggccatgccagcttcacagccgtgtccgagttcctgctcaca
caccctgtgctcagctttggtgttcaggacgtcagccgcagccgcctgcgccacacagag
gtcctcctcccagatgaggagagcgagagtatgactgcagagggtaaccagggcccaatg
gaatccagagctgggatccaaatcaagctatactgtgtccacacaaagtcccttcaagac
gtgcagatctggttccagccaaaccttgggtctggctcttccttgtttctgcctcactca
gactcaaacgatggctttgggttttcggatcacttgacagacatgagcgtggaatgtttg
agctctgacaaggagtccggatgcggctcccaaaatgatctccgcaagattcctgccctt
cctgctcccgctgacttcatgtcccccactggcgccaccactatgcccaagctcatgacc
cctgacgcctttatgacccccagtgcttcagtcccagcctccccaggcagcagtgccagc
agcctgacaatagtgacagccatgaccagcaactctgacagtggggccaggggaggagag
gagctgaaccagaacctcaagatgtctgtggagagcagcagcagtagcagtctgactctc
agtgcgagcaccagcagccccagggccagctccattctcatctcaggccttggggacaac
atgccggtgcttccctctccaaacccgcccctctcgctggacccacaggtcattgagcct
atgctgattcagcaggcctctcccaccctggcccgctctccagacgtcatctcatctgcc
tccacggccatgtcccaggacatccctgagatcgcctctgagacgctgcagagaggcctg
ggggttgtgtctggagctgaatcccgagaccctctcccagcccaccacacagacagcatg
gcttctgcagcctcagcccttcacctcctctcaccacggaaccggaacaactctggccac
ctgcccctggagctgggtgctggagtaggagcagtggaggcggagcagaggctcagtaac
actccttcactactggagaacgccctgtcacaggagaatgctgctgcagccgccgctgcc
tcctgctcagacaacaatacaagccacccctggcctgcagctcccgacatcacacgggaa
acgcgcaacagcctgcgggacaacggcctaggagactgctcgagggaggaaatgaaggac
agacacatgtcctctccataccacagacgcacctaccacttaacccagaatgacagtcag
gacgccagtgcagaacagagtgaccatgacgatgagggagccagtctagcgtcgtcctca
gggaactgtggagccaggtcgtctcaaagactgccagtgaaggagtggaagagttctccc
agaggctcccctaaactcaagaggaagagtaaaaaagatgatggggatgcatctcatgcc
tctcatgtttctcatgcctctcagtccaggcagcctgagcatcataatcatcaacatcaa
cagatgaaccctgagatgcaggaagagctgctgatgctgctgcgtaaccagcagagggag
ctagcggatctccgtcagagtcagctggagctgctgcagagagtgacgggccacatggac
gctgtgcagagctctgtcatagcccatgtagagcacgtcatggtcagccagcaggagcac
gaacagaggagaatggagagaatcctagctgagggacacaaccgtaaccagcaactccag
gagcatctctcccagcagctggctcaaactctcaacaacaccctgtgtaaccgtctggac
aagactctccgagaggagatgaagaagaccgttcctcccactatcatcaagagtctggag
cctgttactgcccagatgagtaacaccatcgctgctaagctgacagctgtggaggcagca
ctgaaggagaatgttagcaaagtcgtcaagtcaaagaacaccacagatgctatcggccgg
gcagctgccgaggcaatgcaggggcctatccaggctgcctacaaggatgcgttccagagc
attgtgctgcctgtatttgagaggggctgccagtctatgttccagcagatcaatgacagc
ttcaagcagggcacccatgagtatatccagcaactggagacccatgtgaagaacaggaag
cagcatgagcaggaggcacgggaccctatgattggccagctgcagcagatgattgacacg
ttccagaattctacggatcagctggccaccaccgtcacagcaggggtccgctctgaggtc
cagcaccagctccacatgacggtgggaaacctgcaggaatcgatcctgacccaggtgcag
cgcatagtgaagggtgaggtgagcatggccatgaaggagcagcaggcagctgtgacctcc
agcatcatgcaggccatgcgctctgctgcaggcacgcccatccctaccgcacacctggac
taccaggcccagcaggccaacatcctgcagctgctgcagcagggacagctcaaccaggcc
ttccaacaggccctgtcagcctctgacctgaacctggtcctgtatgtgtgcgagaccatc
gactcccagcaggtgtttggccagcatccctgccccctgatacagccagtgctgctgtcc
ctcatacagcagctatccactaacctggccacacgctctgagctcaagatcagttacttg
gaggatgctgtgatgaacctggaccatggtgatccggtgacgagagaccacatgagtact
gtgctgtcccaggtccgacagaagctgatccagttcctgcagcaggacccacacagtcct
ctcagcaagagagcccggcgcctggtgatgatgcttcagggcctggtcaatcactag
DBGET
integrated database retrieval system
