Coregonus clupeaformis (lake whitefish): 121576649
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Entry
121576649 CDS
T08357
Name
(RefSeq) transcriptional repressor CTCF-like isoform X1
KO
K23195
transcriptional repressor CTCF
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cclu03000
]
121576649
03036 Chromosome and associated proteins [BR:
cclu03036
]
121576649
Transcription factors [BR:
cclu03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
121576649
Chromosome and associated proteins [BR:
cclu03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
121576649
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-H2C2_2
zf-C2H2
zf-C2H2_4
zf-C2H2_16
zf-H2C2_5
zf-C2H2_jaz
zf-C2H2_7th_ZNF462
zf-C2H2_REST
zf-met
Zf-C2H2_ZNF451
zf-C2HE
zf-C2H2_6
Zf-C2H2_ZNF451_C
zf-C2H2_15
DTHCT
Motif
Other DBs
NCBI-GeneID:
121576649
NCBI-ProteinID:
XP_041745900
LinkDB
All DBs
Position
11:complement(17152671..17158511)
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AA seq
797 aa
AA seq
DB search
MKYSFLVQVLPMDGGPTDVVVEAKDSITYEGEEVVADLLQQAAEGVMDEQPAGEACLDPQ
QLVDGVNVEMMVMDSLDPALLQMKTEVMDAPVVTAHEATVTTVDETQIITLQVVNLEEQQ
LGGLGELQLVQVPVSAVPVTQATVEELQGTFVDATAMPKDGNPMICHTLPLPEGFQVVKV
GANGEVETVEQDELQHQEEQQVQPEEEEEELHCEPQAEDPQWTTDPDYQPPAKKTAKKAK
KSKLRYNTEGDKDNMDVSVYDFEEEQQEGMLSEVNAEKVVGNMKPPKPTKIKKKGVKKTF
QCELCSYTCPRRSNLDRHMKSHTDERPHKCHLCGRAFRTVTLLRNHLNTHTGTRPHKCQD
CDMAFVTSGELVRHRRYKHTHEKPFKCSMCDYASVEVSKLKRHIRSHTGERPFQCSLCSY
ASRDTYKLKRHMRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVI
ARKSDLGVHLRKQHSFIEQGRKCRYCDAVFHERYALIQHQKSHKNEKRFKCDQCDYCCRQ
ERHMLMHRRTHTGEKPYSCSQCEKTFRQKQLLDMHFRRYHDPNFVPTAFVCTKCGKTFTR
RNTMARHAENCNGDPGEGENGIPPKRGRGGRKRKMRSRKDDDDDDSEDNADPELDDIDEE
DEEAEAALLEDEEEEEEMELEQAPPTKPIPAPVEPPVKRKRGRPPKNAPKPASPAKASKA
TPKGKAAAAAAIIQVEDENTGAIENIIVKNEPEAEQAAIEVVVEQSEEAEAGVALPVAEV
ASNGDLTPEMILSMMDR
NT seq
2394 nt
NT seq
+upstream
nt +downstream
nt
atgaagtattcctttctggtgcaggtattaccaatggacggaggaccaactgacgttgtg
gttgaggccaaggacagcatcacctatgagggggaggaggtggtggcagacctgctccag
caagcagcagagggggtgatggacgagcagccagcgggagaggcatgtctagatccccag
cagctggtggatggagtcaatgtggagatgatggtaatggattccctggacccggccctg
ctgcagatgaagactgaggtgatggacgcccctgtggtcacagcccacgaggccactgtc
accactgtggatgagacccagatcatcactctgcaggttgtcaatttggaggagcagcag
cttggaggccttggggagctacagctagtccaggtgcctgtctctgctgtgcccgtaacg
caggccactgtagaggagctacagggaacctttgtggacgccacggccatgcccaaagat
ggaaatcctatgatctgccacaccctgcccctgccagagggcttccaggtggtgaaggtg
ggtgcgaatggtgaggtggagacagtggagcaggatgagctccagcaccaggaggagcag
caggtccagcctgaggaggaggaggaggagctgcactgcgagccccaggctgaagaccca
caatggaccacggacccagactaccagcccccagccaagaagactgccaagaaggcaaag
aagagcaagctgcgctacaacacagagggggacaaagacaacatggatgtgtctgtctat
gactttgaggaggagcagcaggaggggatgctctctgaggtcaacgcggagaaggtggtg
ggcaacatgaagccccccaaacccaccaagatcaagaagaagggtgtgaagaaaacattc
cagtgtgagctgtgtagctacacctgtccccgccgctccaacctggaccgacatatgaag
agccatacggacgagaggccccacaagtgccatctgtgtggaagggccttcaggaccgtt
accctgctgaggaaccacctcaacacacacacaggtaccagaccacacaagtgtcaagat
tgtgacatggcctttgtgaccagcggagagctggtccgacatcgtcgctacaagcacact
catgagaaacccttcaagtgctccatgtgtgactatgccagtgtggaggtgagcaagctg
aagcggcacatccgttcccacaccggggagcgtccgttccagtgcagtctgtgcagctac
gccagcagagacacctacaagctgaagagacacatgaggacacactcgggagagaagcca
tatgaatgctacatctgccacgcccgtttcacccagagtggaaccatgaagatgcacatc
ctgcagaagcacacagagaacgtggccaagttccactgcccccactgtgacacagttatc
gcccgcaagagtgacctgggtgtccatctgcgtaagcagcactcgttcattgagcagggc
aggaaatgccgttactgtgatgctgtgttccacgagcgctacgctctcatccagcaccag
aagtcccacaagaatgagaaacgcttcaagtgtgaccagtgtgactactgctgcagacaa
gagcgccacatgctgatgcacaggcgcacgcacacaggagagaagccttactcctgtagc
cagtgcgagaagaccttccgtcagaagcagctcctggacatgcacttccggcgctaccat
gaccccaactttgtgccgactgcctttgtgtgcacaaagtgtggcaagaccttcacccgc
aggaacaccatggccagacatgcagagaactgtaacggggatcctggtgaaggagagaat
ggaatcccacccaagagaggacgaggtgggaggaagaggaagatgcgctcaaggaaggac
gatgatgacgacgacagtgaggacaatgctgatcctgagctggatgacattgatgaagag
gatgaggaggctgaggcggcactgctggaggatgaagaagaggaggaggagatggagttg
gagcaggctccacccaccaagcctatccctgcccctgtggagcctcccgtgaagaggaaa
cgcggtagaccccccaagaatgcgcccaaacccgcctcacctgccaaagctagcaaggct
acccctaagggcaaggctgctgcagcagcagccatcatccaggtggaggatgagaataca
ggtgccatagagaacatcatagtgaagaatgagccagaggctgagcaggctgccatagag
gtggtggttgagcagtcagaggaggcagaggcaggggtggcgctgcctgtagcagaggtt
gcgtccaacggagatctcacccctgagatgatcctcagcatgatggaccggtga
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