Coregonus clupeaformis (lake whitefish): 121576749
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Entry
121576749 CDS
T08357
Name
(RefSeq) LOW QUALITY PROTEIN: low-density lipoprotein receptor-related protein 5
KO
K03068
low density lipoprotein receptor-related protein 5/6
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04150
mTOR signaling pathway
cclu04310
Wnt signaling pathway
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09130 Environmental Information Processing
09132 Signal transduction
04310 Wnt signaling pathway
121576749
04150 mTOR signaling pathway
121576749
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cclu04131
]
121576749
Membrane trafficking [BR:
cclu04131
]
Endocytosis
Clathrin-mediated endocytosis
Low-density lipoprotein receptor (LDLR) family proteins
121576749
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ldl_recept_b
FXa_inhibition
Ldl_recept_a
DUF5050
Vgb_lyase
EGF_LRP2
SGL
cEGF
EGF
Insulin_TMD
Motif
Other DBs
NCBI-GeneID:
121576749
NCBI-ProteinID:
XP_041746098
LinkDB
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Position
11:29641383..29736464
Genome browser
AA seq
1624 aa
AA seq
DB search
MELKPRGIAMDVFLVELLFYSSLLSVVNGSPLLLFANRRDVRLVDVEMGRPESAVVVSDL
EDAAAVDFLYSEGLIFWTDVSEEAIKQTYYNQSTNSLKEALGTGQTVVVSGLDSPDGLAC
DWLGRKLYWTDSETNRIEVANLDGTSRKVLFWLDLDQPRAIALNPAHRYMYWTDWGEEPR
IERAGMDGSNRKIIVEVDIYWPNGLTIDLDEQKLYWADAKLSFIHRANLDGSSRETVVEG
TLTHPFALTLSDETLYWTDWQTRSIHACNKHTGDKRREILSGIYSPMDIQVLGSDRQPDI
HTPCSDGNGGCSHLCLLSPMQPFYSCACPTGVKLKEDGKTCRPGAEQVLLLARRTDLRRI
SLDLPDFTDIVLQVDDIRHAIAIDYDPVDGYVYWTDDEVKAIRRSRIDGTEAQTLVTTEI
NHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTSRRILISENLDEPRAIVLDPVHGYMYW
TDWGEKPKIERANLDGMERLVLLNTSLGWPNGLAIDYEAGKLYWGDAKTDKIEVIDVDGS
NRMTLLEDKLPHIFGFTLLGDYIYWTDWQRRSIERVHKTNAIREIIIDQLPDLMGLKATR
VTEVSGTNGCAEDNGGCSHLCFHRPQGLRCACPMGLELLSDLRTCVVPEAFLLFTNRADI
RSISLGTNSNDVAIPLTGVKEASALDFDVSENRIYWTDVSTKTISRAFMNGSSVEHVIEF
GLDYPEGMAVDWMGRNVYWADTGTNRVEVARLDGQYRQVLVCKDLDNPRSLALNPANGYM
YWTEWGGKPRIARAHMDGSNIVTLVDKVGRANGLTIDYIDQRLYWTDLDTCMIESTNMQG
LQREIVADDLPHPFGLTQYRDYIYWTDWNLRSIERADKRSGLNRTMVQGHLEYVMDILVF
HSSRQDGANDCSQNNGNCAHLCLASPAGAQCRCASHYILDSNSRNCSSPSSFLLFSQKAS
ISRMVLGEQSPDIILPIHVLRNVRAISYDPLDHLVYWVDGRQNIRRARDDGTQSSVVVST
TSTHQQQQDKQPHDLSLDPYSRTVYWTCEATNTINLQRLDGDAVGVVLRDEHDKPRAIVV
NAEKGYMYFTTMQDRSAKIEGASLDGTERESLFTTGLIRPVALALDNKLGKLFWVDADLK
RIESSDLTGANRIVLQDSNILQPMGLTVLGEHLYWIDRQQQMIERVDKLIGEKRTRIQGR
IAYLTSIHAVEDMDPTEFASHPCSRDNGGCSHICIAKGDGTPRCSCPMHLVLLPNLLICG
EPPTCSTEQFTCATGDIDCIPMAWRCDGFAECDDNSDEENCPVCSAIQFQCDKGQCVDAQ
LRCNGEPDCADNSDELDCETICLPNQFRCNNNQCILKKQQCDSYNDCADNSDELFCEFLT
PSSSDVHSPSHTSTIGPVIGIILSVFVMGGMYFVCQRVVCRRYKGPNGAFPHEYISGTPH
VPLNFIAPNSSQHGTFTGISCGKSMMSSVSLMGSSCSGAPLYDRNHVTGASSSSSSSTKG
AFYPQMLNPPPSPATDRSLYNAEIFYSSNSPSTTRSYRPYLMRGVAPPTTPCSTDVCDSD
YTTSRWKSNKYYMDLNSDSDPYPPPPTPRSQYLSAEESCPPSPSTERSYFHLCPPPPSPC
TDSS
NT seq
4875 nt
NT seq
+upstream
nt +downstream
nt
atggaattaaagccacgaggaattgcaatggacgtttttctcgtggaattactgttttat
agtagcttgctctctgtagttaatggatccccattgctgctgtttgccaaccggcgggat
gtaaggctggtggatgtggagatggggaggccagagtcagcagtggtggtcagtgatctg
gaggatgctgctgccgtggacttcctctactctgaaggactcatcttctggaccgacgtc
agcgaggaggccatcaagcagacctactacaatcagtccaccaactctctgaaagaggca
ttggggacagggcaaactgttgttgtttcgggcctcgactcccctgacggactggcttgt
gattggttgggccgtaaactatactggaccgactcggagaccaatcgcattgaggtagcc
aacctggatggcacctctcgcaaggtgctattctggttggacctggaccagccccgggcc
atcgccctgaacccagcccaccgctatatgtactggacagactggggggaggagcctcgc
atcgagagggcagggatggacggaagcaacaggaagatcatcgtggaggtggacatctat
tggcccaacggcctcaccattgacctggacgaacagaaactgtactgggcagacgccaag
ctgagcttcatacacagagccaacctggacggctcctcacgggagactgtggtggagggc
accctcacccacccgtttgccctcaccctgtcagatgagactctctactggacagactgg
cagacccgttctatccatgcctgcaacaaacacactggagacaagaggagggagatactc
agtggaatctactcccccatggacatccaagtgctgggttcagatagacagccagatatc
cataccccctgcagtgacggcaacggaggctgctcccacctgtgcctgctgtcgcccatg
caacccttttacagctgtgcctgccccactggagtcaagctcaaggaggatgggaagacc
tgtcgcccaggtgcggagcaggttctgctgctggctaggcggactgacctgaggaggatt
tctctggacctcccagacttcacagacatcgttctgcaggtggacgacatccgccatgcc
atcgccatcgactatgaccctgtggacggatatgtgtactggacggacgacgaggttaaa
gccatccgccgctcccgcattgacggcaccgaggcccagaccctggtcaccacggagatc
aaccacccagatggcattgcggtggattgggtggcccggaatctgtactggacggataca
gggactgaccgtattgaggttacaaggctgaacggaacctcccggcgcattctgatctca
gagaacctggatgaaccaagggccattgtgctggaccctgtccatggttatatgtactgg
acagactggggggagaagcctaagatagagcgtgctaacctggatggaatggaacgtctc
gtgctgctcaatacctcgctgggttggcccaacggtttagccatcgactatgaagcagga
aaactgtactggggcgatgcaaagacggacaaaattgaggtgattgacgtggacggctcc
aacaggatgaccctgctggaggacaagctgcctcacatctttggcttcacgctgctgggc
gactacatctactggacggactggcagaggaggagcatcgagagggtccacaagaccaac
gccatccgagagatcatcattgatcagctgcctgatctcatgggactcaaggccaccaga
gtcactgaggtctccggcacgaacggctgtgcggaggacaatggcggctgcagccacctt
tgtttccaccggccccagggcctgcgctgtgcctgtcccatgggcctagagctcctcagt
gacctgaggacgtgcgtggtgcccgaggctttcctgctcttcaccaaccgggctgacatc
cgttccatctccctcgggaccaactctaacgacgtggccatccccctcaccggggttaag
gaggcctccgccctcgactttgacgtctccgagaacaggatctactggactgacgtcagc
accaagaccatcagcagggccttcatgaacggcagctctgtagagcatgtgattgagttt
gggctggactacccagaaggcatggcggtagactggatgggcaggaacgtgtactgggct
gatacagggaccaaccgtgtcgaggtggcccggctggatggacagtaccgacaggtcctg
gtgtgtaaggacctggacaaccctcgctccctggcccttaaccctgccaatggctacatg
tactggacagagtggggaggcaagcccaggatcgccagggcccatatggacggcagcaac
atagtgaccctagtggacaaagtgggcagagccaacggcctcaccatcgactacatcgac
cagagactctactggaccgacctggatacctgtatgatagagtcaaccaacatgcaaggt
ctgcagagggagatagtggctgacgacctccctcatccgtttggcctgacccagtaccgg
gactacatctactggacagactggaacctgcgcagcatcgagcgggccgacaagcgctct
gggctgaaccgcaccatggtccagggacacctggagtacgtcatggacattctggtcttc
cactcctctcgccaggacggtgccaatgactgctcccagaacaacggcaactgtgcccac
ctttgcctggcgtcgccagccggcgcccagtgccgctgtgcctcccactacatcctggac
tccaacagcaggaactgcagctccccctctagcttcctcctgttcagccagaaggcctca
atcagccgcatggttctgggtgagcagagccccgacatcatccttcccatccacgtcctc
cgcaacgtccgggccatcagctacgaccccctggaccacctggtctactgggtggacgga
cggcagaacatcaggagggcccgtgacgatggcacacagtcatcagtggtggtgtccacc
acttccacccaccagcagcagcaagacaagcagccccacgacctgagcctggacccctac
agccgtactgtctactggacttgtgaggccaccaataccatcaacctccagcgcctggac
ggagacgccgtgggcgtggtgctgcgagatgaacatgacaaacccagagccatcgtagtc
aacgccgaaaaagggtatatgtatttcaccaccatgcaggatcgctctgctaagatcgag
ggagcgtctctggatgggacggagcgggagtctttgtttaccacgggtctgatccggcct
gtagccctggccctggacaacaagctggggaaactcttctgggtggacgctgacttgaaa
cgcattgagagcagtgacctcactggagccaatcggatcgtcctccaggattctaacatc
ctgcagcccatgggtctgacagtgctgggggagcacctgtactggatcgacagacagcag
cagatgatcgagagggtggacaagctgattggggagaagaggacccgcatccagggccgc
atcgcctacctcaccagcatccacgctgtggaagacatggaccctacagagtttgcttct
catccctgttcccgtgacaacggaggctgctcacacatctgcatcgccaaaggagacggg
acacctcgctgctcctgtcccatgcacctggtcctgctgcccaacctgctcatctgtgga
gaaccacccacctgttccacagagcagttcacctgtgccacgggggacattgactgcatc
cccatggcatggcgctgtgacggcttcgctgagtgtgatgacaacagtgacgaggaaaac
tgccccgtgtgctcggcaatccagttccagtgtgacaagggccagtgtgtggatgctcag
ctacgctgcaacggagagccagactgcgcagacaactccgatgaactggactgtgagacc
atatgcctgcccaaccagttccgctgcaacaacaaccagtgcatcctgaagaaacagcag
tgtgactcctacaatgactgtgctgacaactctgacgagctcttctgtgaattcctcact
ccctcgtcaagcgacgttcactcaccatctcacaccagcaccatcggcccagtcattggc
atcatcctgtcagtctttgtgatgggagggatgtactttgtgtgccagcgggtggtgtgc
cgtcgctacaagggtcccaacggagccttcccccacgagtacatcagtggcacccctcac
gtacccctcaacttcatcgcccccaacagttcacagcacggaaccttcacaggtatctcg
tgtgggaagtctatgatgagttctgtcagtctgatggggagcagctgtagtggggcgccg
ctctacgacaggaaccatgtgacaggggcctcctccagcagctcctccagcaccaaggga
gccttctatccacagatgctcaacccgcctccctctccagccacggatcgctccctgtat
aatgcagagatcttctactcctctaacagtccctccaccaccaggtcttacaggccttat
ctaatgcgtggtgtggcgccccccaccaccccctgcagcactgacgtctgtgacagtgac
tacaccacaagtcgttggaagagcaacaagtactacatggacctaaactcagactctgac
ccctaccctcctccccccactccccggagccagtacctatcagcagaggagagctgcccc
ccttctccatccacagagcgcagttacttccacctctgtcccccgcccccctcaccctgc
actgactcctcatga
DBGET
integrated database retrieval system
