Coregonus clupeaformis (lake whitefish): 121576782
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Entry
121576782 CDS
T08357
Name
(RefSeq) protein strawberry notch homolog 2 isoform X1
KO
K26273
protein strawberry notch
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
cclu03036
]
121576782
Chromosome and associated proteins [BR:
cclu03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
121576782
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_34
Helicase_C_4
SBNO
ResIII
Motif
Other DBs
NCBI-GeneID:
121576782
NCBI-ProteinID:
XP_041746170
LinkDB
All DBs
Position
11:31916270..32040645
Genome browser
AA seq
1630 aa
AA seq
DB search
MPTLPSPSPAMDGENCLHPEGPQLDSSIFDVATSNMESYMYPSGSWGSFSQQSGGYSALC
PMQSGNQQYHLNAPTPDMHMDMFSHLGFHDDFPSLNLPRNGDFPQDLSCIDDLSNSLFSS
PADSLSEYADAQVFIPTDNLAHVPTIWDINTPAPSQLELNANRFQGLSSFEDISAIISTP
PLGGYQAQRTQTPAEEEAEEEEEETEELGHVDTYADYKPSKSTIGISHPDIVVETNTLSS
VPPPDITYTLSIPDSTINCGLLSALQLEAVIYACQQHEVILQNNQRAGFLIGDGAGVGKG
RTVAGIILENYLKGRKKALWFSVSNDLKYDAERDLKDIDAPTIPVHALNKIKYGDTATSE
GVLFATYSALIGESQAGGQHRTRLKQILDWCKPGFDGVIVFDECHKAKNATSTKMGKAVL
DLQHNLPLARVVYASATGASEPKNMIYMSRLGIWGEGTPFKTFDDFLHAIEKRGVGAMEI
VAMDMKVSGMYIARQLSFSGVSFRIEEIGLDDDFKLVYNKAAKLWAEALAVFMRAADELC
LVSRKSLWGQFWSSHQRFFKYLCIAAKVRCLVELAKKELEAGKCIVIGLQSTGEARTREV
LDENDGHLDRFVSAAEGVFKALVQKHFPSEKQRREKARGNKRKRKPRGRQPKFPKHTMVH
LGGVINISDDSSTDTDGMDTDSNSSPDSLMDNNDDVIFVQHTSCHTASIEKMKQGLLIKI
ADLGKELPLNTLDELIDKFGGPEKVSEMTGRKGRVVRRPDGSVRYESRAEQSHTIDHINL
KEKDRFMCGEKLVAIISEAASSGISLQADKRVKNQHRRVHMTLELPWSADRAIQQFGRTH
RSNQVTAPEYIFLISELAGERRFASIVAKRLESLGALTHGDRRATESRDLSKYNFENKYG
TKALDKITKAILGHIESKVSPPKGYPGGDALFFRDMKHGMMDVGIFCKEPRFGLSTEKDC
SITKFLNRILGLEVHKQNSLFQYFTDNFDYLIEKDKKEGKYDMGILDLAPGNDEIYEEKQ
ETFMTVGNPQDGQVVLYKISVDRGMPWEEAYEKVQNLNSPDEGFYLSHKLRGNHPCVLLA
EQGRGRNLIVYKPNIGKQAHPESLDNLQLRYRKVTSNQAKDSWESQFNFSFGKCSHANWN
GKCKKIEEGQECLQGMRLRQYHMLCGALLRVWKRVADVVSDITCSSILQIVRLKTKNSNK
QVGIKIPENCVARVREELLKMDEEVKRRRKEKEQQRAQEQRLAEERQLQNQHLLAKLYSQ
TQTLNQSLKNQNLSQSLSQCLKTQSLAQAKPLHVKPLFQPKPSQLKPQLSPVNQLPSMAS
LTSHFSHYPHHFPSLPLLQPAPSSTSKPPRTGEEVLDLTVSPSPSPDSTEGGLVLDCLTG
GSVGSFGEDFGLESLISLSALAAQNTAHKLQQPLQPLPPLTKPQQLQSSQQIQPQLQLSQ
QIQPQLQSSQQIQPQLQSSQQIQPQLQSSQQIQPQLQSSQQIQPQLQSSQQIQPQLQSSQ
QIQPQLQQRLDSPTLINSAHQDYYDILNLLDDPDHLPYSLSSQTTTNPSSSSNTVAQVSS
GLLSSPSTPSSSLFTSSALAPSEQQPLPLANGHCSTDALINVREVLDNMLRTSADRQSVI
HYRLHEWDSV
NT seq
4893 nt
NT seq
+upstream
nt +downstream
nt
atgcccaccctcccatcaccctcaccggccatggacggggagaactgcctgcacccagag
gggccgcagttggacagcagcattttcgacgttgccacttccaatatggagagttatatg
tatccctctggttcctggggatcattctcacagcagtctggaggctacagcgcactctgc
cctatgcaatctggaaaccagcaataccacttgaatgcccccacgcccgatatgcacatg
gacatgttcagccatttggggttccatgacgatttcccctccctcaacctccccaggaac
ggagacttccctcaggacctatcctgcatcgatgacctctccaactctctgttctcctct
ccggccgactctctgtcagagtacgccgatgcccaggtcttcatccccacagacaacctg
gcccacgtgcccacgatatgggacataaacacaccagcaccgagccagctggagctgaat
gccaacaggtttcagggtttgagcagttttgaggatatctcagccattatcagcacccca
cctttgggaggataccaggctcagagaacccagactccggcagaggaggaggcagaggag
gaggaggaggagactgaggagctgggacatgtagacacctacgccgactacaaaccatcc
aaatccaccatagggatctcccacccagacatagtggtggagaccaacacactgtccagc
gtccctcctcctgacatcacctacactctgtccattcctgactccaccatcaactgtggc
ctgctctctgccctgcagctagaggccgtcatctacgcatgccagcaacacgaggtaatc
ctgcagaacaaccagagagcaggcttcctgataggagacggggccggagtgggtaagggc
cgcacggtggccggcatcatcctagagaattacctaaaaggaaggaagaaagcattatgg
ttcagtgtatccaatgacctgaaatacgacgcagagagagatctcaaagacatagatgct
cccactattcctgtgcatgccttaaacaaaataaagtatggcgacacagctacctcagaa
ggagtcctgtttgcgacatactctgcgctgatcggggagagccaagcaggggggcagcac
cgcaccagactcaagcagatcctggactggtgcaagcctggctttgatggagttattgtg
tttgacgaatgccacaaggccaagaatgccacgtccaccaagatgggcaaggccgtgctg
gacctgcagcacaacctgccgctggccagggtggtttacgccagtgccacaggtgcctct
gagccaaagaacatgatctatatgagccgcctgggaatctggggtgagggcacgccattc
aagaccttcgatgacttcctgcacgccatcgagaagaggggtgtgggggccatggagatt
gttgccatggacatgaaggtgagtgggatgtacatcgcccggcagctgagcttctcaggg
gtgtccttccgcatcgaggagatcggcctggatgacgacttcaaactggtctacaacaaa
gctgccaaactgtgggcggaggctctggccgtgttcatgcgtgcggcggacgagctgtgt
ctggtcagcaggaagtccctgtggggtcagttctggtcgtcccaccagcgcttcttcaaa
tacctctgcatcgccgccaaggttcgctgcctggtggagctggccaagaaagagctggaa
gctggcaagtgcatcgtgatcggtctgcagtccacaggagaggcccgaaccagagaggtc
ctggacgagaacgatgggcacctggacagattcgtatctgcagcagagggtgtgttcaaa
gctctggtacagaaacactttccctcagagaagcagaggagagagaaggcacgtggaaac
aagagaaaacgtaagcccaggggacggcagcccaaattcccaaagcacaccatggtgcat
ctggggggcgtgatcaacatcagtgacgacagcagcacggacacggacggcatggacacc
gactccaactcctcgccagactccctgatggacaacaacgatgacgtcatcttcgtccag
cacaccagctgtcacacagccagtatagagaagatgaagcagggcctcctgatcaagatc
gctgacctgggaaaggaactacctctgaacactctggacgagctcattgacaagtttgga
ggaccagagaaggtctcggagatgacgggtcgtaagggtcgcgtggtgcgacgtcctgac
ggaagcgtgcgctacgagtcgcgtgcggagcagagccataccatagaccacatcaacctc
aaggagaaggaccgcttcatgtgcggcgagaagctggtggccatcatctcggaggcggcc
agctcgggcatctccctgcaggcagacaagcgggtgaagaaccagcatcggagggtacac
atgaccctagagctgccctggagtgcagacagagccatccagcagtttggtcgtacccat
cgctctaaccaggtgacggctccagagtacatcttcctcatctctgagctggccggggaa
agacgcttcgcctccattgtggccaagagactggagagtctgggtgcattgacccacggt
gacaggagagccacagagtccagagacctgagcaaatacaacttcgaaaacaagtatggt
accaaggctctggataagatcaccaaagccatcctgggccacatcgagagcaaggtgtcc
cctcccaaaggctaccctgggggtgatgccctgttcttcagagacatgaagcatggcatg
atggatgtgggtatcttctgcaaggagccacgctttggtctcagtactgagaaagactgc
agcatcaccaagttcctcaacaggatcctgggcctggaggtccacaagcagaactctctg
ttccagtacttcaccgacaactttgactacctgatcgaaaaggacaagaaggagggcaaa
tacgacatgggcatcctagatctggccccaggtaacgatgagatctacgaggagaagcaa
gagaccttcatgacagtgggaaacccccaggacggacaggttgtgctctacaagatcagc
gtggacagagggatgccgtgggaggaggcctatgagaaggtccagaacctcaacagtcct
gacgagggtttctacctctctcacaagttgcgggggaaccacccgtgtgtgctgttggcg
gagcagggccgagggaggaaccttatcgtctacaagcccaacattggcaagcaggcccac
ccagagagcctggacaacctccaactacgctaccgcaaggtgacctcaaaccaagccaag
gacagctgggagagccagttcaacttttcctttgggaaatgtagccatgctaactggaac
gggaagtgtaagaagatcgaggagggtcaggagtgtctgcagggcatgcgtctgcgccag
taccacatgctgtgtggtgcgctgctgcgcgtctggaagcgcgtggccgacgtggtttct
gacatcacctgctccagcatccttcagatcgtacgcctaaaaaccaaaaatagtaacaag
caagtcggtatcaagatcccagagaactgcgtggcccgagtgcgtgaggaacttctcaaa
atggacgaggaggtgaagaggaggcgcaaggagaaggagcagcagcgcgcccaggagcag
cggctagccgaggagcggcagcttcagaaccaacacctgctggccaagctttacagccag
acacagaccctgaaccagagcctcaagaaccagaacttgtcgcagagcctcagccagtgc
ctcaagacccagagcctggcccaggccaagcctctacacgtcaagcctctattccagccc
aaaccttcacagctcaaaccccagctcagcccagtcaaccagctccccagcatggccagc
ctcacctcccacttctcccactatccccaccacttcccctccctgcccctcttgcaaccc
gccccctcctccacctccaagccccctcggaccggggaggaggtcttagacctgacggtg
agcccctctccctccccagacagcacggaaggaggcctggtcctcgactgcctgacgggg
ggatccgtggggagctttggagaggactttggcctggagtctctgatatcgctgagcgcg
ctcgccgcccagaacactgcacacaaactgcagcaacctctacagccactgccaccactg
acaaagccacagcagctacagtcgtcacagcagatacaaccacagctacagttgtcacag
cagatacaaccacagctacagtcgtcacagcagatacaaccacagctacagtcgtcacag
cagatacaaccacagctacagtcgtcacagcagatacaaccacagctacagtcgtcacag
cagatacaaccacagctacagtcgtcacagcagatacaaccacagctacagtcgtcacag
cagatacaaccacagctacagcagcggttggacagtccgactctaatcaacagcgcccat
caggactactatgacatcctcaacctgctggacgatccagaccatctaccttactctctg
tccagccagacaactactaacccctcctcttcctccaacacagtggctcaagtctcgtct
ggcctcctctcttccccctctaccccctcctcctctctcttcacctcttcggccctggcc
ccctcagaacagcagccactccctctggccaacggccactgcagcacggacgccctcatc
aatgtgcgcgaggtactggacaacatgctacggaccagcgcagaccggcagtcggttatc
cattaccggctgcatgaatgggactctgtgtaa
DBGET
integrated database retrieval system
