Coregonus clupeaformis (lake whitefish): 121576814
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Entry
121576814 CDS
T08357
Name
(RefSeq) UV excision repair protein RAD23 homolog B-like
KO
K10839
UV excision repair protein RAD23
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03420
Nucleotide excision repair
cclu04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
121576814
09124 Replication and repair
03420 Nucleotide excision repair
121576814
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03051 Proteasome [BR:
cclu03051
]
121576814
03400 DNA repair and recombination proteins [BR:
cclu03400
]
121576814
Proteasome [BR:
cclu03051
]
Eukaryotic proteasome
Proteasome interacting proteins (PIPs)
UBL-UBA shuttle proteins
121576814
DNA repair and recombination proteins [BR:
cclu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
XPC-HR23B-CETN2 complex
121576814
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XPC-binding
UBA
ubiquitin
UBA_7
Rad60-SLD
DUF1421
Ubiquitin_2
UBA_3
Crinkler
Rad60-SLD_2
UBAP-1_UBA2
Motif
Other DBs
NCBI-GeneID:
121576814
NCBI-ProteinID:
XP_041746250
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Position
11:complement(33410890..33422137)
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AA seq
469 aa
AA seq
DB search
MLSITLKTLQQQTFKIEIDPELTVKALKEKIEIEKGKDGYPAAGQKLIYAGKILNDDIPL
KYYRIDEKNFLVVMVTKPKPPATPQISPQAAPAPAPASTPDPAPPAVSGLSLSDIARPTS
SPAPMEISTLSPTPTPAPASNPTQSVESFTPPAPAPAPASIPQEALRASAAPAPATAASS
ISEDKPQGEHPEQPFATPPALSSSSLVDDLSLLEEAASILVTGQAYDNLVSKIMSMGYEM
EQVVAALRASYNNPDRAVEYLLMGIPAEADLLPPEAFLPTALANLNPTAPAPAPAPAPAS
DRAQPPPAATTGAVSSTQQPPSSGVLTGGLTGGTGGGTGGGNPLEFLRNQPQFQQMRQVI
QQNPALLPALLQQLGRDNPQLLQQITQHQERFVQMLNEPQGGEMVEEGVEAQGAPQTNYI
QVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFLLQQTFDDE
NT seq
1410 nt
NT seq
+upstream
nt +downstream
nt
atgctgtcgataacgttgaagactcttcagcagcaaacgtttaaaatagaaatagaccca
gaactaacggtaaaagccctgaaggagaagattgagattgagaaagggaaggatggctat
ccagccgcggggcaaaagctaatctacgcaggcaaaatattgaatgatgacataccttta
aaatactacagaattgatgagaaaaactttctggtggtcatggttacaaagcccaaacct
ccagctactccacagatttctcctcaggcagccccagccccagccccagcctctacccct
gaccctgcacctcctgctgtttctgggctgtccctctctgacattgcccgacctacctcc
tcccctgcccccatggaaatctccaccctgtcccctacacccacacctgcccctgcctca
aaccccacacaatcagtggagtccttcacaccccctgcccctgcaccagcccctgcttct
attccccaagaagcccttcgggccagtgcagccccagctccagccacagcagcatcctcc
atctcagaggacaagcctcagggggagcaccctgaacagccctttgccacaccaccagcc
ctctcctcctccagccttgttgatgacttaagtctcctggaagaagcagcatcaatactg
gtgacaggacaggcatatgataatctggtgtctaaaataatgtctatgggatatgaaatg
gagcaggttgttgcagcgctgcgagccagttacaacaacccagacagagctgtggagtac
ctgctaatggggattccggccgaggctgaccttctgccaccggaggcgttcctacccaca
gctctggccaacctcaaccccactgccccagctcctgccccagcccctgctccagcctca
gatagagcccagccaccaccagcagccacgacaggcgcagtgtcttcaacccagcagccc
ccctcatctggtgtgctgactggtgggcttactggtggtactggtggaggtactgggggt
gggaaccccctggagtttctgaggaaccagccacagttccagcagatgagacaggtcatc
cagcagaacccagctctccttcctgccctgctccagcagctaggcagagacaacccccag
ctgctgcagcaaattacccagcaccaggagcggtttgtgcagatgctgaacgagccccaa
ggaggagagatggtagaggagggagttgaggcccagggggcgccacagactaactacatc
caggtcaccccacaagagaaggaggccatcgagaggttaaaagccttgggatttccagag
ggacttgtcattcaagcatatttcgcatgtgagaagaacgagaatttagctgctaatttc
ctgctccaacaaacatttgatgacgagtga
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