Coregonus clupeaformis (lake whitefish): 121576855
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Entry
121576855 CDS
T08357
Symbol
abca7
Name
(RefSeq) phospholipid-transporting ATPase ABCA1 isoform X1
KO
K05641
ATP-binding cassette, subfamily A (ABC1), member 1
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu02010
ABC transporters
cclu04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
121576855 (abca7)
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
121576855 (abca7)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
cclu02000
]
121576855 (abca7)
Transporters [BR:
cclu02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
121576855 (abca7)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
R1_ABCA1
AAA_21
AAA_23
Motif
Other DBs
NCBI-GeneID:
121576855
NCBI-ProteinID:
XP_041746330
LinkDB
All DBs
Position
11:complement(35221589..35266993)
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AA seq
2369 aa
AA seq
DB search
MGIGTQLLLLLWKNITYRRRNKIQLIIELVWPLFLFLILISVRHSHPPYKQSKCHFPNKA
LPSAGTLPWVQGIICNINNPCFHSPTQGETPGRVGNFDNSILSRLLVDSQTILSYSGNQT
AFSGFQDLLDTIRRLGERPGTWPNLPVGEYLRANQTFSNFLLTNGSLSPSALDQLFRARL
NFQVVSLAGTGVMLKDIVCNSTVLSQFLTVDQEDSMAELQSQLCAIPADSLQQAEQLFLS
QLDFSKFFTRDRLRANAGDLRVISQAVTSVSKELAVLMDDLSSLSSFRELNSELRLLSPE
NRSALPRESFRAFSRIMCGHPEVGGERIPSLNWYEDNDIKSFLGKNGTEDNNMDKDNVTT
PYCKSLIQSLESNPLSRIVWRGIKPLFIGKLLYTPDTPAVHNVMKEVNKTFQDLQILQEL
NGAWMEVGPGIKTYMESSVEIQLLQDLLRRPEVAVLVNLQLEDTPWTAKRIARFLSTPNE
PRKEGAPPTWLDVYTDLNNTITTLAQVTQCFSLNKLEGAATEGQMIDRALELLGEREFWA
GIVFLLPNTTSPDLPPHVTYKIRMDIDDVARTNKIKDRFWDPGPAADPFSDMRYIWGGFV
YVQDLVERAVARVLSGVEQTTGLYIQQMPYPCYVDDVFLRVLNRSLPLFMTLAWIYSVAM
IIKGVVYEKEARLKETMRIMGLGTGQLWVSWFISSLVPFLVSAGLLIALLKWGDILPYSN
PTVVFFFLTAFATATIMQCFLISTFFSRANLAAACGGLIYFALYLPYVLCVAWRDHLTTT
HRVLASLFSPVAFGFGCEYFSQYEEQGVGIQWFNLHSSPMEGDTYNFTTSIIMLHIDACI
YALATWYIEAVFPGEYGVPRPWNFVFSLNYWGGIPLEAGIPIPPAPRGQGGDRIEADPSH
LILGVAIRNLVKIYKQGAKLAVNHLNLKFYEGQITSFLGHNGAGKTTTMSILTGLFPPTA
GTVYIKGMDIRTDMDIIRKTLGVCPQHNVLFDILTVEEHVWFYGRLKGLSGDEVRKELDT
LLEDVGLLHKRHEQTRNLSGGMQRKLSVAIAFVGGSKVVVLDEPTAGVDPYSRRGIWDLL
LKYRKDRTIILSTHYMDEADLLGDRIAIISQGKLCCCGSPLFLKAKLGMGYYLTVVKKEG
LDTRTPSSASATKLPPATKDSDSSMSDDTGLGSDVSGSDLAALLALVQRHIPGARLVEDV
GREAVINLPQKSVEDSSLAIFLTELDRRQADLGITSYGLSDTTLEEIFLRVAEETGVDVD
PEESPGQADTPQGQGQGQGQGQGLSGEPSEDPGMKRLRKQEPQETDLLSGDGHGGVPLTG
WGLTWQQLRALFIKRWLYALRSRRGFFAQIVLPAVFVLIALLFSLIVPPFGKYPSLQLQP
WMYGEQYTFFSNDAPGDPAIQNLLDALLDRPGFGTKCMENSMDPQCLQEEEGMFMRPQIL
YSTWQLFNRGNWTADKPSPDCECSSEEVRRMLPDCPEGAGGIPPPQSQRLTGDILQNMTG
RNISDYLVKTYPQIMKKSLTSATKKWINEFRYGGFSLGGRGTQAVPQAYQMEDSVMSIRS
RYRVAQNSSLDQLLGRLPEFLGGLNSQNNVKVWYNNKGWHAMASFVNVMNNGLLRASLPP
GPERMKHGITAYNHPLNLTKEQLTEIAMMTTSVDVLVSICVIFSMSFVPASFVLFLIEER
VSKAKHLQFVSGVRPILYWLANFTWDMLNYTVPATMVVLIFICFQQQSYVSETNLPALVL
LLLLYGWSITPLMYPASFLFSVPSTAYVVLTSINLFIGINGSIATFVLELFVDQHLNDIN
KILKKVFLIFPHFCLGRGLIDMAKNQAMSDAFQRLGTKQTLDPLEWDFVGKNLFAMAVEG
VVFFLFTILLQYKFFINCRPCSEPELPPLGPEDEDIARERERVKSGKAQADILTMMDLSK
VYKAGKKPAVDRLCLGIPRGECFGLLGVNGAGKTSTFRMLTGDTAITYGEAFLSHHSVLT
EMERVHQLMGYCPQFDAICDLLTGREHLEFYARLRGVPEESVAKVAQWGVKKLGLTQYAE
REAGGYSGGNKRKLSTAISLIGAPPVIFLDEPTTGMDPKAKRFLWNCILSVIKEGRAVVL
TSHSMEECEALCTRMAIMVNGRFQCLGSVQHLKNRFGDGYTIVLRLSGTNPPKPPEDPCP
VDTYIKGSFPGIELKERHQNVLQYQLPSNACSLARVFDVLSNNHEELGIADYSVSQTTLD
QVFVNFAKEQSDEDRLREVTVNGGTPAPQPRRVAQPTQLGQTAKPAQTTKPLQSVKSSDG
RPRETKPNGVTDSGMAMTSRPQEKPESSRGSSRGSSRGESRGESRRESSSRRSSRESSAN
GSKGTRETSGNKDPTSLFLVGSNTQDSSV
NT seq
7110 nt
NT seq
+upstream
nt +downstream
nt
atggggattgggactcagctcttgctcctgctctggaagaacatcacttaccgcaggagg
aacaagatccagttgattatcgagctggtctggcctctgttcctgttcctcatcctcatc
tcagtgcgtcactctcatcctccctacaaacagagcaaatgtcatttccccaacaaggca
cttccctcagcaggcaccctgccatgggttcaggggatcatctgcaacatcaacaacccc
tgcttccacagccccactcagggggagaccccagggcgggtgggcaactttgacaactcc
atactctctcgactcttagtggactcccagacaatcttgtcctacagtggtaaccagaca
gccttctctggctttcaggaccttctagatactatacggagacttggagagaggccaggc
acctggccaaatcttcctgtgggagaatacctgcgagccaatcagaccttctccaacttt
ctcttgaccaatggcagcctgtctccctctgccctagaccagctgtttagggctcgcctg
aactttcaggtggtgtctctggcaggcactggagtgatgctgaaggacattgtgtgcaat
tccactgtgctgagccagttcctcactgtagatcaagaggattctatggcggagctgcag
agccagctctgtgccatcccagccgactccctgcagcaagcagagcagctcttcctctcc
cagctggacttcagcaagttcttcacgagagacagactgagggccaacgccggtgacctc
cgggtcatcagtcaagcggtcacctccgtgtccaaggagttggcagtactcatggatgac
ctgtcctctctctccagctttagggagttgaactcggagctgcgtctgctctcgccagag
aaccgctcggccctgccgcgggagagcttcagggccttctccaggattatgtgtggccac
cctgaggtgggcggcgagaggatcccttcactcaactggtacgaggacaacgacatcaag
tcctttctgggcaagaacggcaccgaggacaacaacatggacaaggacaacgtcaccacc
ccgtactgtaaaagcttgatccagagcctggagtccaacccactgtctcgcatcgtgtgg
cgagggatcaagcccctgttcattggcaagctgctgtacacaccagacacccctgccgta
cacaacgtcatgaaagaggtgaacaagaccttccaggacctgcagatcctacaggagctg
aatggtgcctggatggaggtgggacctggtatcaagacctacatggagagtagtgtggag
atacagctgctgcaggatctgctgaggcggccagaggtagccgtgttggtcaacctgcag
ctggaggacactccctggacggccaagcgcattgcccgcttcctgtccacgcccaacgaa
cccaggaaagaaggagcgccccctacctggctggatgtgtacaccgacctgaacaacacc
atcaccaccctggctcaagtcacccaatgtttctccctgaacaagctggagggtgctgcc
acagagggccagatgattgacagggccttggagctgctgggggagagagagttctgggct
gggatagtgttcctcctgcccaataccacctcacccgatctgccccctcacgtcacatac
aagatccgtatggacatcgacgatgtcgcacgcaccaacaagatcaaggacaggttctgg
gacccaggcccagcagcggaccccttcagtgacatgcgctacatctgggggggctttgtg
tacgtacaggacctggtggagagagctgtggcccgcgtgctgagtggtgtggagcagacc
actggcctctacatccagcagatgccctacccctgctacgtggatgacgttttcctacgt
gtgctgaaccgctcgctgcccctgttcatgacgctggcgtggatctactcggtggccatg
atcatcaagggcgtggtgtacgagaaggaggcgcggctcaaggagaccatgaggatcatg
gggcttggtacaggccagctgtgggtcagctggttcatcagcagcctggtgcccttcctg
gtcagcgccggcctcctcattgctctgctcaagtggggggacatcctgccctacagcaac
ccgactgtggtgttcttcttcctgacggctttcgctacggccaccatcatgcagtgtttc
ctcatcagcaccttcttctcccgggccaacctggcggccgcctgcggaggcctcatctac
ttcgccctctacctgccctacgtgctgtgtgtggcctggagagaccacctcaccaccaca
caccgtgtcctagccagcctgttttcccctgtggcctttggctttggctgtgagtatttc
tcccagtacgaggagcaaggagtgggcatccagtggttcaacctgcattccagccccatg
gagggagacacctacaatttcaccacgtccataatcatgctgcatatcgatgcatgtatc
tacgctctggccacctggtacattgaagctgttttcccaggtgaatatggggtgcccagg
ccatggaatttcgtgttcagtttgaactattggggaggaattcctctagaggccggcata
cccatccctcctgctcccagaggacagggaggagatcgaatcgaagccgacccctctcac
ctcatactgggtgtggccatccgcaacctggtcaaaatctataagcaaggcgccaagctg
gcggtcaaccacctcaatctcaagttctacgaaggccagatcacctctttcctggggcac
aacggtgctggcaaaacaaccaccatgtctatcctgacgggtctgtttccccccacggct
gggaccgtgtacattaagggcatggacatccgcactgacatggacatcatcaggaagacc
ctgggagtgtgtcctcagcacaatgtcctttttgacattctgaccgtagaggagcatgtg
tggttctatggtcgtctgaagggcctatcaggcgacgaggtgaggaaggagttggacact
ctcctggaggacgtgggcctgctgcacaaacgccacgaacagaccaggaacctgtctggt
ggtatgcagaggaagctgtcggtggccatagcatttgtggggggctctaaggtggtggtc
ctggatgagcccacagctggggtggacccctattcccgtcgaggcatttgggacctgctg
ctcaagtaccgcaaagatcgcaccatcatcctctccacccactacatggatgaggctgac
cttctcggagaccgcatagccatcatctcccaggggaagctgtgctgctgcggctcccct
ctcttcctcaaggccaagctggggatgggctactacctcaccgtcgtcaagaaggaggga
ctggatactcgaacccccagtagtgccagcgctaccaaactgccccctgccacaaaggac
agcgactcctccatgagtgacgacacaggattgggcagtgatgttagcggctcagatctg
gccgccctgttggccctggtgcagcgtcacatccccggggcccggctggtggaggacgtg
gggcgtgaggcggtcatcaacctgccccagaagtcggtagaggacagcagcctggccatc
ttcctcaccgagcttgacaggaggcaagctgatctgggcatcaccagctacggcctgtct
gacaccaccctggaggagatctttctgagagtggctgaggagacgggggtggacgtggac
ccagaggagagcccgggacaagccgacacgccccaggggcagggtcaaggacagggtcaa
ggacagggcttgtctggagagccatctgaggatccaggaatgaaacggcttcgcaagcaa
gagccccaggagacagacctgctgagcggggatggccatggcggagtccctctgaccggg
tggggcttgacgtggcagcagctgcgtgcactcttcatcaagaggtggctgtacgccctc
cgcagtcgcaggggcttcttcgctcagatcgtgctgcctgctgtgtttgtgttgattgct
ttgctcttcagcctcatcgtccctccgttcggaaagtacccctcgctccagctgcagccc
tggatgtatggcgaacagtacactttcttcagcaacgatgcccctggggatcctgccatt
cagaatctgctggatgcccttctcgaccggcctggatttggaaccaagtgcatggaaaac
agcatggatcctcaatgtttgcaggaggaggaaggcatgttcatgaggccccagattctc
tactccacctggcagctcttcaacagaggcaactggactgcagacaagccctctcctgac
tgtgagtgcagctctgaggaggtccgcaggatgctaccagactgccccgaaggagccgga
ggcatcccccctccacagagccagagattgacaggggatatcctgcagaatatgaccggc
cgcaatatctcggactacctggtcaagacttaccctcagataatgaagaaaagcctaact
tcagccactaagaagtggatcaatgaattcagatatgggggcttctctctggggggcaga
ggcactcaggctgtcccacaggcctaccaaatggaggactcagtcatgtctatacggtca
cgttacagagtggcacagaatagctcattggatcagctcctgggtcgcctaccagagttt
ctgggtggactgaatagtcagaacaatgttaaggtgtggtataacaacaagggttggcac
gccatggcatcgtttgtcaatgtcatgaacaatggcctgctccgtgccagcctgccccca
gggccagagcgaatgaagcatggcataaccgcctacaaccaccccctcaacctcaccaag
gaacagctcactgaaattgccatgatgaccacctcagtagatgttctggtgtccatctgt
gtgatcttctccatgtcctttgtgccggccagcttcgtgctgtttctcatcgaggagagg
gtcagcaaagccaagcaccttcagtttgtcagcggagtccggcccattctctactggctg
gccaacttcacctgggacatgctgaactatacagtcccggccactatggtggtcctcatc
ttcatttgcttccagcaacagtcctacgtgtctgaaaccaacctccctgctctggtcctg
ttgctcttgctttatggctggtctatcactcctctcatgtatccagcctccttcctgttc
agtgtccccagcactgcctatgttgtcctcacctcaatcaacctctttatcgggatcaac
ggcagcatcgccacctttgtcttggagctgttcgtagatcagcacttgaacgatatcaac
aagatcctaaagaaagtcttcctgatcttcccccacttctgtctgggccgaggcctcatc
gacatggctaagaaccaggctatgtcggacgctttccagagactgggcacaaagcagacc
ctggaccccctggaatgggactttgtggggaagaacttgtttgccatggctgtggaggga
gtcgtgttctttctcttcacaatactgctacagtacaagttcttcatcaactgcaggccc
tgctcagagcctgagctgccccctcttggcccagaggacgaggacatcgccagggagaga
gagagggtgaagagtgggaaagcccaagccgatatactcaccatgatggacctgagtaag
gtgtacaaagctggcaagaagccagcagtggatcgtctgtgtctgggtattcctcgtggg
gagtgctttgggctgctgggggtaaacggggctgggaagacctccacgtttcgcatgctg
actggagacacagcgatcacctatggagaagcatttctcagtcatcacagtgtgctgact
gagatggagcgggtccaccagctgatgggctactgcccccagtttgatgccatctgcgac
ctgctgactggcagggagcacctggaattctacgccaggctccgaggggtgccagaggag
tctgtggccaaggtggctcaatggggagtgaagaagctggggctgacccagtacgcagag
cgagaggccggaggctacagcggaggcaacaaacgcaaactctccactgccatctccctg
atcggagctcctcctgttatattcctggatgagcccaccactggcatggatcccaaggcc
aagagattcctgtggaactgcatcctgagcgtcatcaaggaaggaagggccgttgttctc
acctcccacagtatggaggaatgcgaagctctctgcactcgaatggccatcatggtgaac
ggaaggttccagtgtctgggctccgttcagcaccttaagaacaggttcggggacggctac
acgatcgtcctgcgcctgtcggggaccaatccacccaagcctcccgaggacccgtgcccg
gtggacacctacatcaagggctccttcccgggcatcgagctaaaggagaggcaccagaac
gtgctgcagtaccagctgccctccaacgcctgctccttggcgcgggtcttcgatgtgctt
tccaacaaccacgaggagctgggcattgccgactactcagtgtcacagaccaccctggac
caggtgtttgtcaactttgccaaggagcagagcgatgaagaccggctgagggaagtgacg
gtcaacggtgggacaccagcacctcaacccagaagagtggcccagcccacccaactaggg
cagacagccaaaccagcccaaacaaccaagcctctccagtctgtcaagtcctcagacggc
agacccagagagaccaaaccaaacggggtcacggacagtggcatggcgatgacaagcagg
ccacaggagaagcccgagtcgagcaggggatcgagcaggggatcgagcaggggagagagc
aggggagagagcaggagagagtcgagtagtaggaggtcaagcagggaatcgtccgccaac
ggatccaagggcacaagggagacttcaggcaataaggatccgaccagtctgttcctagtg
ggtagcaacacacaagacagcagtgtgtaa
DBGET
integrated database retrieval system
